SCOPe 2.08: Protein: RNase H (RNase HI)

Lineage for Protein: RNase H (RNase HI)

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
consists of one domain of this fold
Family c.55.3.1: Ribonuclease H [53099] (5 proteins)
Protein RNase H (RNase HI) [53100] (4 species)

Species:

Escherichia coli [TaxId:562] [53101] (33 PDB entries)
Uniprot P0A7Y4
1. Domain for 1f21:
  - Domain d1f21a_: 1f21 A: [33550]
2. Domain for 1g15:
  - Domain d1g15a_: 1g15 A: [60197]
    complexed with mn
3. Domain for 1goa:
  - Domain d1goaa_: 1goa A: [33564]
4. Domain for 1gob:
  - Domain d1goba_: 1gob A: [33565]
5. Domain for 1goc:
  - Domain d1goca_: 1goc A: [33566]
6. Domain for 1jl1:
  - Domain d1jl1a_: 1jl1 A: [66821]
7. Domain for 1jxb:
  - Domain d1jxba_: 1jxb A: [71931]
    mutant
8. Domain for 1kva:
  - Domain d1kvaa_: 1kva A: [33559]
    mutant
9. Domain for 1kvb:
  - Domain d1kvba_: 1kvb A: [33562]
    mutant
10. Domain for 1kvc:
  - Domain d1kvca_: 1kvc A: [33560]
    mutant
11. Domain for 1lav:
  - Domain d1lava_: 1lav A: [33554]
    mutant
12. Domain for 1law:
  - Domain d1lawa_: 1law A: [33557]
    mutant
13. Domain for 1rbr:
  - Domain d1rbra_: 1rbr A: [33556]
    mutant
14. Domain for 1rbs:
  - Domain d1rbsa_: 1rbs A: [33558]
    mutant
15. Domain for 1rbt:
  - Domain d1rbta_: 1rbt A: [33555]
    mutant
16. Domain for 1rbu:
  - Domain d1rbua_: 1rbu A: [33552]
    mutant
17. Domain for 1rbv:
  - Domain d1rbva_: 1rbv A: [33553]
    mutant
18. Domain for 1rch:
  - Domain d1rcha_: 1rch A: [33570]
19. Domain for 1rda:
  - Domain d1rdaa_: 1rda A: [33567]
    mutant
20. Domain for 1rdb:
  - Domain d1rdba_: 1rdb A: [33561]
    mutant
21. Domain for 1rdc:
  - Domain d1rdca_: 1rdc A: [33568]
    mutant
22. Domain for 1rdd:
  - Domain d1rdda_: 1rdd A: [33569]
    protein/RNA complex; complexed with mg
23. Domain for 1rnh:
  - Domain d1rnha_: 1rnh A: [33563]
    complexed with so4
24. Domains for 1wse:
  1. Domain d1wsea1: 1wse A:1-155 [121228]
    complexed with mn; mutant
  2. Domain d1wseb_: 1wse B: [121229]
    automated match to d1wshb_
    complexed with mn; mutant
25. Domains for 1wsf:
  1. Domain d1wsfa1: 1wsf A:1-155 [121230]
    complexed with mn; mutant
  2. Domain d1wsfb_: 1wsf B: [121231]
    automated match to d1kva__
    complexed with mn; mutant
  3. Domain d1wsfc_: 1wsf C: [121232]
    automated match to d1kva__
    complexed with mn; mutant
  4. Domain d1wsfd_: 1wsf D: [121233]
    automated match to d1kva__
    complexed with mn; mutant
26. Domains for 1wsg:
  1. Domain d1wsga1: 1wsg A:1-155 [121234]
    complexed with mn; mutant
  2. Domain d1wsgb_: 1wsg B: [121235]
    automated match to d1wsic_
    complexed with mn; mutant
  3. Domain d1wsgc_: 1wsg C: [121236]
    automated match to d1wsic_
    complexed with mn; mutant
  4. Domain d1wsgd_: 1wsg D: [121237]
    automated match to d1wsic_
    complexed with mn; mutant
27. Domains for 1wsh:
  1. Domain d1wsha_: 1wsh A: [114849]
    mutant
  2. Domain d1wshb_: 1wsh B: [114850]
    mutant
  3. Domain d1wshc_: 1wsh C: [114851]
    mutant
  4. Domain d1wshd_: 1wsh D: [114852]
    mutant
28. Domains for 1wsi:
  1. Domain d1wsia_: 1wsi A: [114853]
    mutant
  2. Domain d1wsib_: 1wsi B: [114854]
    mutant
  3. Domain d1wsic_: 1wsi C: [114855]
    mutant
  4. Domain d1wsid_: 1wsi D: [114856]
    mutant
29. Domains for 1wsj:
  1. Domain d1wsja_: 1wsj A: [114857]
    mutant
  2. Domain d1wsjb_: 1wsj B: [114858]
    mutant
  3. Domain d1wsjc_: 1wsj C: [114859]
    mutant
  4. Domain d1wsjd_: 1wsj D: [114860]
    mutant
  5. Domain d1wsje_: 1wsj E: [114861]
    mutant
  6. Domain d1wsjf_: 1wsj F: [114862]
    mutant
  7. Domain d1wsjg_: 1wsj G: [114863]
    mutant
  8. Domain d1wsjh_: 1wsj H: [114864]
    mutant
30. Domain for 2rn2:
  - Domain d2rn2a_: 2rn2 A: [33551]
31. Domain for 3aa3:
  - Domain d3aa3a_: 3aa3 A: [171893]
    automated match to d1rcha_
32. Domain for 3aa4:
  - Domain d3aa4a_: 3aa4 A: [171894]
    automated match to d1rcha_
33. Domain for 3aa5:
  - Domain d3aa5x_: 3aa5 X: [171895]
    automated match to d1rcha_
Human spumaretrovirus [TaxId:11963] [256389] (1 PDB entry)
- Domain for 2lsn:
  - Domain d2lsna1: 2lsn A:5-165 [242988]
    Other proteins in same PDB: d2lsna2
    automated match to d2zqbb_
synthetic, Escherichia coli/Thermus thermophilus chimera [69532] (1 PDB entry)
- Domains for 1jl2:
  1. Domain d1jl2a_: 1jl2 A: [66822]
  2. Domain d1jl2b_: 1jl2 B: [66823]
  3. Domain d1jl2c_: 1jl2 C: [66824]
  4. Domain d1jl2d_: 1jl2 D: [66825]
Thermus thermophilus [TaxId:274] [53102] (1 PDB entry)
- Domain for 1ril:
  - Domain d1rila_: 1ril A: [33571]

More info for Protein RNase H (RNase HI) from c.55.3.1: Ribonuclease H

Timeline for Protein RNase H (RNase HI) from c.55.3.1: Ribonuclease H:

Protein RNase H (RNase HI) from c.55.3.1: Ribonuclease H first appeared (with stable ids) in SCOP 1.55
Protein RNase H (RNase HI) from c.55.3.1: Ribonuclease H appears in SCOPe 2.07