Lineage for Family c.55.3.1: Ribonuclease H

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2460924Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2462855Superfamily c.55.3: Ribonuclease H-like [53098] (16 families) (S)
    consists of one domain of this fold
  5. 2462856Family c.55.3.1: Ribonuclease H [53099] (5 protein domains)

Protein Domains:

  1. 2462857BH0863-like Ribonuclease H [142490] (3 species)
    new class of RNase H
    1. 2462858Species Bacillus halodurans [TaxId:86665] [142491] (21 PDB entries)
      Uniprot Q9KEI9 61-193! Uniprot Q9KEI9 62-193
      BH0863
    2. 2462888Species Escherichia coli [TaxId:562] [190024] (1 PDB entry)
    3. 2462890Species Shewanella oneidensis [TaxId:211586] [190023] (1 PDB entry)
  2. 2462892Class II ribonuclease H (RNase HII) [53103] (5 species)
    1. 2462893Species Archaeoglobus fulgidus [TaxId:2234] [64093] (2 PDB entries)
    2. 2462896Species Methanococcus jannaschii [TaxId:2190] [53104] (1 PDB entry)
    3. 2462899Species Pyrococcus horikoshii [TaxId:53953] [110639] (2 PDB entries)
      Uniprot O59351
    4. 2462903Species Thermococcus kodakaraensis [TaxId:311400] [64094] (1 PDB entry)
    5. 2462905Species Thermotoga maritima [TaxId:2336] [142489] (1 PDB entry)
      Uniprot Q9X017 1-221
  3. 2462907HIV RNase H (Domain of reverse transcriptase) [53105] (3 species)
    1. 2462908Species Hiv-1 m:b_hxb2r [TaxId:11706] [224897] (8 PDB entries)
    2. 2462917Species Human immunodeficiency virus type 1 [TaxId:11676] [53106] (104 PDB entries)
      Uniprot P04585 159-692 # chain A coverage; chain B is shorter: 162-582 ! Uniprot P03366 186-725 # chain A coverage; chain B coverage: 156-584 ! Uniprot P04585 158-698 # chain A coverage; chain B is shorter: 159-595
    3. 2463036Species Human immunodeficiency virus type 2 [TaxId:11709] [82443] (1 PDB entry)
  4. 2463038RNase H (RNase HI) [53100] (4 species)
    1. 2463039Species Escherichia coli [TaxId:562] [53101] (33 PDB entries)
      Uniprot P0A7Y4
    2. 2463093Species Human spumaretrovirus [TaxId:11963] [256389] (1 PDB entry)
    3. 2463095Species synthetic, Escherichia coli/Thermus thermophilus chimera [69532] (1 PDB entry)
    4. 2463100Species Thermus thermophilus [TaxId:274] [53102] (1 PDB entry)
  5. 2463102automated matches [190266] (7 species)
    not a true protein
    1. 2463103Species Bacillus halodurans [TaxId:272558] [188179] (2 PDB entries)
    2. 2463107Species Escherichia coli K-12 [TaxId:83333] [189502] (1 PDB entry)
    3. 2463109Species Escherichia coli [TaxId:562] [188270] (5 PDB entries)
    4. 2463116Species Human immunodeficiency virus 1, escherichia coli [TaxId:11676] [189090] (1 PDB entry)
    5. 2463121Species Shewanella oneidensis [TaxId:70863] [188955] (1 PDB entry)
    6. 2463126Species Thermococcus kodakarensis [TaxId:69014] [187055] (3 PDB entries)
    7. 2463130Species Thermotoga maritima [TaxId:2336] [189559] (4 PDB entries)

More info for Family c.55.3.1: Ribonuclease H

Timeline for Family c.55.3.1: Ribonuclease H: