SCOPe 2.07: Protein: T5 5'-exonuclease

Lineage for Protein: T5 5'-exonuclease

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.120: PIN domain-like [88722] (1 superfamily)
3 layers, a/b/a; core: parallel beta-sheet of 5 strands, order 32145
Superfamily c.120.1: PIN domain-like [88723] (3 families)

Family c.120.1.2: 5' to 3' exonuclease catalytic domain [53045] (4 proteins)
contains an alpha-helical arch and additional strand 6 antiparallel to the rest; strand order 321456; similarity to the resolvase-like fold

Protein T5 5'-exonuclease [53050] (1 species)

Species:

Bacteriophage T5 [TaxId:10726] [53051] (6 PDB entries)
1. Domains for 1exn:
  1. Domain d1exna2: 1exn A:20-185 [33358]
    Other proteins in same PDB: d1exna1, d1exnb1
  2. Domain d1exnb2: 1exn B:20-185 [33359]
    Other proteins in same PDB: d1exna1, d1exnb1
2. Domains for 1ut5:
  1. Domain d1ut5a2: 1ut5 A:20-185 [99903]
    Other proteins in same PDB: d1ut5a1, d1ut5b1
    complexed with mn
  2. Domain d1ut5b2: 1ut5 B:20-185 [99905]
    Other proteins in same PDB: d1ut5a1, d1ut5b1
    complexed with mn
3. Domains for 1ut8:
  1. Domain d1ut8a2: 1ut8 A:20-185 [99909]
    Other proteins in same PDB: d1ut8a1, d1ut8b1
    complexed with zn
  2. Domain d1ut8b2: 1ut8 B:20-185 [99911]
    Other proteins in same PDB: d1ut8a1, d1ut8b1
    complexed with zn
4. Domains for 1xo1:
  1. Domain d1xo1a2: 1xo1 A:19-185 [33356]
    Other proteins in same PDB: d1xo1a1, d1xo1b1
    mutant
  2. Domain d1xo1b2: 1xo1 B:19-185 [33357]
    Other proteins in same PDB: d1xo1a1, d1xo1b1
    mutant
5. Domains for 5hml:
  1. Domain d5hmla1: 5hml A:20-185 [317967]
    Other proteins in same PDB: d5hmla2, d5hmlb2
    automated match to d1exna2
    complexed with b3p, cl, edo, iod, mg
  2. Domain d5hmlb1: 5hml B:20-185 [318027]
    Other proteins in same PDB: d5hmla2, d5hmlb2
    automated match to d1exna2
    complexed with b3p, cl, edo, iod, mg
6. Domains for 5hmm:
  1. Domain d5hmma1: 5hmm A:20-185 [318000]
    Other proteins in same PDB: d5hmma2, d5hmmb2
    automated match to d1exna2
    complexed with cl, edo, mg
  2. Domain d5hmmb1: 5hmm B:20-185 [317977]
    Other proteins in same PDB: d5hmma2, d5hmmb2
    automated match to d1exna2
    complexed with cl, edo, mg

More info for Protein T5 5'-exonuclease from c.120.1.2: 5' to 3' exonuclease catalytic domain

Timeline for Protein T5 5'-exonuclease from c.120.1.2: 5' to 3' exonuclease catalytic domain:

Protein T5 5'-exonuclease from c.120.1.2: 5' to 3' exonuclease catalytic domain first appeared (with stable ids) in SCOP 1.55, called Protein T5 5'-exonuclease from c.53.1.2: 5' to 3' exonuclease
Protein T5 5'-exonuclease from c.120.1.2: 5' to 3' exonuclease catalytic domain appears in SCOPe 2.06
Protein T5 5'-exonuclease from c.120.1.2: 5' to 3' exonuclease catalytic domain appears in the current release, SCOPe 2.08