SCOPe 2.06: Family c.45.1.2: Higher-molecular-weight phosphotyrosine protein phosphatases

Lineage for Family c.45.1.2: Higher-molecular-weight phosphotyrosine protein phosphatases

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.45: (Phosphotyrosine protein) phosphatases II [52798] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 1423

4. Superfamily c.45.1: (Phosphotyrosine protein) phosphatases II [52799] (6 families)
   share with the family I the common active site structure with a circularly permuted topology

5. Family c.45.1.2: Higher-molecular-weight phosphotyrosine protein phosphatases [52805] (7 proteins)
   has an extension to the beta-sheet of 3 antiparallel strands before strand 4

Proteins:

1. Protein-tyrosine phosphatase alpha [102420] (1 species)

   • Species Mouse (Mus musculus) [TaxId:10090] [102421] (1 PDB entry)

2. Protein-tyrosine phosphatase YopH, catalytic domain [100952] (2 species)

   1. Species Yersinia enterocolitica [TaxId:34055] [225588] (3 PDB entries)

   2. Species Yersinia enterocolitica [TaxId:630] [52812] (19 PDB entries)

3. RPTP Lar [52815] (1 species)
   duplication: tandem repeat of the phosphatase domain

   • Species Human (Homo sapiens) [TaxId:9606] [52816] (1 PDB entry)

4. SptP tyrosine phosphatase, catalytic domain [52813] (1 species)

   • Species Salmonella typhimurium [TaxId:90371] [52814] (2 PDB entries)

5. Tyrosine phosphatase [52806] (7 species)

   1. Species Human (Homo sapiens), 1B [TaxId:9606] [52807] (128 PDB entries)
      Uniprot P18031 2-300 ! Uniprot P18031 1-298 ! Uniprot P18031 2-299

   2. Species Human (Homo sapiens), mu [TaxId:9606] [52808] (1 PDB entry)
      receptor protein tyrosine phosphatase mu, domain 1

   3. Species Human (Homo sapiens), shp-1 [TaxId:9606] [52811] (4 PDB entries)

   4. Species Human (Homo sapiens), shp-2 [TaxId:9606] [52810] (1 PDB entry)

   5. Species Human (Homo sapiens), T-cell [TaxId:9606] [75233] (1 PDB entry)
      non-receptor type 2

   6. Species Mouse (Mus musculus) [TaxId:10090] [52809] (1 PDB entry)
      receptor protein tyrosine phosphatase alpha, domain 1

   7. Species Mouse (Mus musculus), ptp-sl/br7 [TaxId:10090] [64051] (1 PDB entry)

6. Tyrosine-protein phosphatase, non-receptor type 13 (PTPL1) [117581] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [117582] (1 PDB entry)
     Uniprot Q12923 2170-2477 # structure of a PDZ domain (1361-1456) is also known (50169)

7. automated matches [190252] (3 species)
   not a true protein

   1. Species Human (Homo sapiens) [TaxId:9606] [187034] (28 PDB entries)

   2. Species Mouse (Mus musculus) [TaxId:10090] [233617] (1 PDB entry)

   3. Species Yersinia enterocolitica [TaxId:630] [226454] (1 PDB entry)

More info for Family c.45.1.2: Higher-molecular-weight phosphotyrosine protein phosphatases

Timeline for Family c.45.1.2: Higher-molecular-weight phosphotyrosine protein phosphatases:

• Family c.45.1.2: Higher-molecular-weight phosphotyrosine protein phosphatases first appeared (with stable ids) in SCOP 1.55
  
• Family c.45.1.2: Higher-molecular-weight phosphotyrosine protein phosphatases appears in SCOPe 2.05
  
• Family c.45.1.2: Higher-molecular-weight phosphotyrosine protein phosphatases appears in SCOPe 2.07
  
• Family c.45.1.2: Higher-molecular-weight phosphotyrosine protein phosphatases appears in the current release, SCOPe 2.08