Lineage for Species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2109203Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2109204Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families) (S)
    division into families based on beta-sheet topologies
  5. 2113070Family c.37.1.14: RNA helicase [52724] (4 protein domains)
    duplication: consists of two similar domains, one binds NTP and the other binds RNA; also contains an all-alpha subdomain in the C-terminal extension
  6. 2113081Protein HCV helicase domain [52725] (1 species)
  7. 2113082Species Human hepatitis C virus (HCV), different isolates [TaxId:11103] [52726] (17 PDB entries)

PDB entries in Species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]:

  1. Domain(s) for 1a1v:
    1. 2113085Domain d1a1va1: 1a1v A:190-325 [32467]
      protein/DNA complex; protein/RNA complex; complexed with so4
    2. 2113086Domain d1a1va2: 1a1v A:326-624 [32468]
      protein/DNA complex; protein/RNA complex; complexed with so4
  2. Domain(s) for 1cu1:
    1. 2113108Domain d1cu1a2: 1cu1 A:187-325 [32471]
      Other proteins in same PDB: d1cu1a1, d1cu1b1
      complexed with po4, zn
    2. 2113109Domain d1cu1a3: 1cu1 A:326-631 [32472]
      Other proteins in same PDB: d1cu1a1, d1cu1b1
      complexed with po4, zn
    3. 2113110Domain d1cu1b2: 1cu1 B:1187-1325 [32473]
      Other proteins in same PDB: d1cu1a1, d1cu1b1
      complexed with po4, zn
    4. 2113111Domain d1cu1b3: 1cu1 B:1326-1631 [32474]
      Other proteins in same PDB: d1cu1a1, d1cu1b1
      complexed with po4, zn
  3. Domain(s) for 1hei:
    1. 2113087Domain d1heia1: 1hei A:187-325 [32463]
      complexed with ca
    2. 2113088Domain d1heia2: 1hei A:326-629 [32464]
      complexed with ca
    3. 2113089Domain d1heib1: 1hei B:188-325 [32465]
      complexed with ca
    4. 2113090Domain d1heib2: 1hei B:326-628 [32466]
      complexed with ca
  4. Domain(s) for 1jr6:
  5. Domain(s) for 1onb:
  6. Domain(s) for 3kqh:
    1. 2113095Domain d3kqha1: 3kqh A:189-325 [212489]
      automated match to d1heia1
    2. 2113096Domain d3kqha2: 3kqh A:326-624 [212490]
      automated match to d1heia2
    3. 2113097Domain d3kqhb1: 3kqh B:189-325 [212491]
      automated match to d1heia1
    4. 2113098Domain d3kqhb2: 3kqh B:326-624 [212492]
      automated match to d1heia2
  7. Domain(s) for 3kqk:
    1. 2113130Domain d3kqka1: 3kqk A:189-325 [212493]
      automated match to d1heia1
      protein/DNA complex
    2. 2113131Domain d3kqka2: 3kqk A:326-624 [212494]
      automated match to d1heia2
      protein/DNA complex
    3. 2113132Domain d3kqkb1: 3kqk B:189-325 [212495]
      automated match to d1heia1
      protein/DNA complex
    4. 2113133Domain d3kqkb2: 3kqk B:326-624 [212496]
      automated match to d1heia2
      protein/DNA complex
  8. Domain(s) for 3kql:
    1. 2113091Domain d3kqla1: 3kql A:189-325 [212497]
      Other proteins in same PDB: d3kqla3, d3kqlb3
      automated match to d1heia1
      protein/DNA complex; complexed with adp, alf, mg
    2. 2113092Domain d3kqla2: 3kql A:326-624 [212498]
      Other proteins in same PDB: d3kqla3, d3kqlb3
      automated match to d1heia2
      protein/DNA complex; complexed with adp, alf, mg
    3. 2113093Domain d3kqlb1: 3kql B:189-325 [212499]
      Other proteins in same PDB: d3kqla3, d3kqlb3
      automated match to d1heia1
      protein/DNA complex; complexed with adp, alf, mg
    4. 2113094Domain d3kqlb2: 3kql B:326-624 [212500]
      Other proteins in same PDB: d3kqla3, d3kqlb3
      automated match to d1heia2
      protein/DNA complex; complexed with adp, alf, mg
  9. Domain(s) for 3kqn:
    1. 2113083Domain d3kqna1: 3kqn A:189-325 [212501]
      Other proteins in same PDB: d3kqna3
      automated match to d1heia1
      protein/DNA complex; complexed with adp, bef, mn
    2. 2113084Domain d3kqna2: 3kqn A:326-624 [212502]
      Other proteins in same PDB: d3kqna3
      automated match to d1heia2
      protein/DNA complex; complexed with adp, bef, mn
  10. Domain(s) for 3kqu:
    1. 2113118Domain d3kqua1: 3kqu A:189-325 [212503]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia1
      protein/DNA complex; complexed with adp, bef, mn
    2. 2113119Domain d3kqua2: 3kqu A:326-624 [212504]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia2
      protein/DNA complex; complexed with adp, bef, mn
    3. 2113120Domain d3kqub1: 3kqu B:189-325 [212505]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia1
      protein/DNA complex; complexed with adp, bef, mn
    4. 2113121Domain d3kqub2: 3kqu B:326-624 [212506]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia2
      protein/DNA complex; complexed with adp, bef, mn
    5. 2113122Domain d3kquc1: 3kqu C:189-325 [212507]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia1
      protein/DNA complex; complexed with adp, bef, mn
    6. 2113123Domain d3kquc2: 3kqu C:326-624 [212508]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia2
      protein/DNA complex; complexed with adp, bef, mn
    7. 2113124Domain d3kqud1: 3kqu D:189-325 [212509]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia1
      protein/DNA complex; complexed with adp, bef, mn
    8. 2113125Domain d3kqud2: 3kqu D:326-624 [212510]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia2
      protein/DNA complex; complexed with adp, bef, mn
    9. 2113126Domain d3kque1: 3kqu E:189-325 [212511]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia1
      protein/DNA complex; complexed with adp, bef, mn
    10. 2113127Domain d3kque2: 3kqu E:326-624 [212512]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia2
      protein/DNA complex; complexed with adp, bef, mn
    11. 2113128Domain d3kquf1: 3kqu F:189-325 [212513]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia1
      protein/DNA complex; complexed with adp, bef, mn
    12. 2113129Domain d3kquf2: 3kqu F:326-624 [212514]
      Other proteins in same PDB: d3kqua3, d3kqub3, d3kquc3, d3kqud3, d3kque3, d3kquf3
      automated match to d1heia2
      protein/DNA complex; complexed with adp, bef, mn
  11. Domain(s) for 3rvb:
    1. 2113112Domain d3rvba1: 3rvb A:186-325 [260019]
      automated match to d1cu1a2
      complexed with cl, i79, mg
    2. 2113113Domain d3rvba2: 3rvb A:326-630 [260021]
      automated match to d1cu1a3
      complexed with cl, i79, mg
  12. Domain(s) for 4ojq:
    1. 2113114Domain d4ojqa1: 4ojq A:186-325 [237405]
      automated match to d1cu1a2
      complexed with 2sx, ca
    2. 2113115Domain d4ojqa2: 4ojq A:326-630 [237406]
      automated match to d1cu1a3
      complexed with 2sx, ca
    3. 2113116Domain d4ojqb1: 4ojq B:187-325 [237409]
      automated match to d1cu1a2
      complexed with 2sx, ca
    4. 2113117Domain d4ojqb2: 4ojq B:326-628 [237410]
      automated match to d1cu1a3
      complexed with 2sx, ca
  13. Domain(s) for 4ok3:
    1. 2113134Domain d4ok3a1: 4ok3 A:187-325 [238286]
      automated match to d4ojqa1
      complexed with 2sy, ca
    2. 2113135Domain d4ok3a2: 4ok3 A:326-629 [238287]
      automated match to d4ojqa2
      complexed with 2sy, ca
    3. 2113136Domain d4ok3b1: 4ok3 B:187-325 [238284]
      automated match to d4ojqa1
      complexed with 2sy, ca
    4. 2113137Domain d4ok3b2: 4ok3 B:326-628 [238285]
      automated match to d4ojqa2
      complexed with 2sy, ca
  14. Domain(s) for 4ok5:
    1. 2113099Domain d4ok5a1: 4ok5 A:184-325 [238292]
      automated match to d4ojqa1
      complexed with 2t2, ca
    2. 2113100Domain d4ok5a2: 4ok5 A:326-629 [238293]
      automated match to d4ojqa2
      complexed with 2t2, ca
    3. 2113101Domain d4ok5b1: 4ok5 B:187-325 [238294]
      automated match to d4ojqa1
      complexed with 2t2, ca
    4. 2113102Domain d4ok5b2: 4ok5 B:326-629 [238295]
      automated match to d4ojqa2
      complexed with 2t2, ca
  15. Domain(s) for 4ok6:
    1. 2113138Domain d4ok6a1: 4ok6 A:185-325 [237407]
      automated match to d1cu1a2
      complexed with 2t7, ca
    2. 2113139Domain d4ok6b1: 4ok6 B:187-325 [238288]
      automated match to d4ojqa1
      complexed with 2t7, ca
    3. 2113140Domain d4ok6b2: 4ok6 B:326-627 [238289]
      automated match to d4ojqa2
      complexed with 2t7, ca
  16. Domain(s) for 4oks:
    1. 2113105Domain d4oksa1: 4oks A:184-325 [237408]
      automated match to d1cu1a2
      complexed with 2t9, ca
    2. 2113106Domain d4oksb1: 4oks B:187-325 [238290]
      automated match to d4ojqa1
      complexed with 2t9, ca
    3. 2113107Domain d4oksb2: 4oks B:326-630 [238291]
      automated match to d4ojqa2
      complexed with 2t9, ca
  17. Domain(s) for 8ohm:
    1. 2113103Domain d8ohma1: 8ohm A:190-325 [32469]
    2. 2113104Domain d8ohma2: 8ohm A:326-624 [32470]

More info for Species Human hepatitis C virus (HCV), different isolates [TaxId:11103] from c.37.1.14 HCV helicase domain

Timeline for Species Human hepatitis C virus (HCV), different isolates [TaxId:11103] from c.37.1.14 HCV helicase domain: