SCOPe 2.08: Protein: Holliday junction helicase RuvB

Lineage for Protein: Holliday junction helicase RuvB

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
division into families based on beta-sheet topologies
Family c.37.1.20: Extended AAA-ATPase domain [81269] (43 proteins)
fold is similar to that of RecA, but lacks the last two strands, followed by a family-specific Arg-finger domain
Protein Holliday junction helicase RuvB [52713] (2 species)
contains "winged helix" DNA-binding domain after the family specific domains

Species:

Thermotoga maritima [TaxId:2336] [64037] (6 PDB entries)
1. Domain for 1in4:
  - Domain d1in4a2: 1in4 A:17-254 [62598]
    Other proteins in same PDB: d1in4a1
    complexed with act, adp, co, hez
2. Domain for 1in5:
  - Domain d1in5a2: 1in5 A:17-254 [62600]
    Other proteins in same PDB: d1in5a1
    complexed with adp; mutant
3. Domain for 1in6:
  - Domain d1in6a2: 1in6 A:17-254 [62602]
    Other proteins in same PDB: d1in6a1
    complexed with act, adp, co; mutant
4. Domain for 1in7:
  - Domain d1in7a2: 1in7 A:17-254 [62604]
    Other proteins in same PDB: d1in7a1
    complexed with act, adp
5. Domain for 1in8:
  - Domain d1in8a2: 1in8 A:17-254 [62606]
    Other proteins in same PDB: d1in8a1
    complexed with adp
6. Domain for 1j7k:
  - Domain d1j7ka2: 1j7k A:19-254 [62696]
    Other proteins in same PDB: d1j7ka1
    complexed with act, atp, co, hez; mutant
Thermus thermophilus [TaxId:274] [52714] (3 PDB entries)
1. Domains for 1hqc:
  1. Domain d1hqca2: 1hqc A:5-242 [32424]
    Other proteins in same PDB: d1hqca1, d1hqcb1
    complexed with ade, mg
  2. Domain d1hqcb2: 1hqc B:5-242 [32425]
    Other proteins in same PDB: d1hqca1, d1hqcb1
    complexed with ade, mg
2. Domain for 1ixr:
  - Domain d1ixrc2: 1ixr C:5-242 [76931]
    Other proteins in same PDB: d1ixra1, d1ixra2, d1ixrb1, d1ixrb2, d1ixrb3, d1ixrc1
    complexed with anp
3. Domain for 1ixs:
  - Domain d1ixsb2: 1ixs B:4-242 [76934]
    Other proteins in same PDB: d1ixsa_, d1ixsb1
    complexed with anp

More info for Protein Holliday junction helicase RuvB from c.37.1.20: Extended AAA-ATPase domain

Timeline for Protein Holliday junction helicase RuvB from c.37.1.20: Extended AAA-ATPase domain:

Protein Holliday junction helicase RuvB from c.37.1.20: Extended AAA-ATPase domain first appeared (with stable ids) in SCOP 1.55, called Protein Holliday junction helicase RuvB from c.37.1.13: Extended AAA-ATPase domain
Protein Holliday junction helicase RuvB from c.37.1.20: Extended AAA-ATPase domain appears in SCOPe 2.07