SCOPe 2.05: Protein: GTPase domain of the signal sequence recognition protein Ffh

Lineage for Protein: GTPase domain of the signal sequence recognition protein Ffh

Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families)
division into families based on beta-sheet topologies
Family c.37.1.10: Nitrogenase iron protein-like [52652] (16 proteins)
core: parallel beta-sheet of 7 strands; order 3241567
Protein GTPase domain of the signal sequence recognition protein Ffh [52664] (3 species)

Species:

Acidianus ambivalens [TaxId:2283] [64023] (2 PDB entries)
1. Domain for 1j8m:
  - Domain d1j8mf2: 1j8m F:87-297 [62743]
    Other proteins in same PDB: d1j8mf1
2. Domain for 1j8y:
  - Domain d1j8yf2: 1j8y F:87-297 [62748]
    Other proteins in same PDB: d1j8yf1
    mutant
Sulfolobus solfataricus [TaxId:2287] [102373] (2 PDB entries)
1. Domains for 1qzw:
  1. Domain d1qzwa3: 1qzw A:88-294 [96701]
    Other proteins in same PDB: d1qzwa1, d1qzwa2, d1qzwc1, d1qzwc2, d1qzwe1, d1qzwe2, d1qzwg1, d1qzwg2
    protein/RNA complex
  2. Domain d1qzwc3: 1qzw C:88-294 [96704]
    Other proteins in same PDB: d1qzwa1, d1qzwa2, d1qzwc1, d1qzwc2, d1qzwe1, d1qzwe2, d1qzwg1, d1qzwg2
    protein/RNA complex
  3. Domain d1qzwe3: 1qzw E:88-294 [96707]
    Other proteins in same PDB: d1qzwa1, d1qzwa2, d1qzwc1, d1qzwc2, d1qzwe1, d1qzwe2, d1qzwg1, d1qzwg2
    protein/RNA complex
  4. Domain d1qzwg3: 1qzw G:88-294 [96710]
    Other proteins in same PDB: d1qzwa1, d1qzwa2, d1qzwc1, d1qzwc2, d1qzwe1, d1qzwe2, d1qzwg1, d1qzwg2
    protein/RNA complex
2. Domains for 1qzx:
  1. Domain d1qzxa3: 1qzx A:88-294 [96713]
    Other proteins in same PDB: d1qzxa1, d1qzxa2, d1qzxb1, d1qzxb2
  2. Domain d1qzxb3: 1qzx B:88-294 [96716]
    Other proteins in same PDB: d1qzxa1, d1qzxa2, d1qzxb1, d1qzxb2

Thermus aquaticus [TaxId:271] [52665] (17 PDB entries)

Domain for 1ffh:
- Domain d1ffha2: 1ffh A:89-295 [32271]
  Other proteins in same PDB: d1ffha1
  complexed with mg
Domain for 1jpj:
- Domain d1jpja2: 1jpj A:89-294 [67025]
  Other proteins in same PDB: d1jpja1
  complexed with gnp
Domains for 1jpn:
1. Domain d1jpna2: 1jpn A:89-296 [67040]
  Other proteins in same PDB: d1jpna1, d1jpnb1
  complexed with acy, ca, gnp
2. Domain d1jpnb2: 1jpn B:89-295 [67042]
  Other proteins in same PDB: d1jpna1, d1jpnb1
  complexed with acy, ca, gnp
Domain for 1ls1:
- Domain d1ls1a2: 1ls1 A:89-295 [78171]
  Other proteins in same PDB: d1ls1a1
  complexed with mg, oxy
Domain for 1ng1:
- Domain d1ng1a2: 1ng1 A:89-294 [32272]
  Other proteins in same PDB: d1ng1a1
  complexed with acy, cd, edo, gdp, mg
Domains for 1o87:
1. Domain d1o87a2: 1o87 A:89-295 [92641]
  Other proteins in same PDB: d1o87a1, d1o87b1
  protein/RNA complex; complexed with cl, fmt, gdp, mg
2. Domain d1o87b2: 1o87 B:89-295 [92643]
  Other proteins in same PDB: d1o87a1, d1o87b1
  protein/RNA complex; complexed with cl, fmt, gdp, mg
Domain for 1okk:
- Domain d1okka2: 1okk A:89-293 [93260]
  Other proteins in same PDB: d1okka1, d1okkd1, d1okkd2
  complexed with bzp, edo, gcp, mg, so4
Domain for 1rj9:
- Domain d1rj9b2: 1rj9 B:89-295 [97556]
  Other proteins in same PDB: d1rj9a1, d1rj9a2, d1rj9b1
  complexed with gcp, mg
Domains for 2c04:
1. Domain d2c04a2: 2c04 A:89-297 [129571]
  Other proteins in same PDB: d2c04a1, d2c04b1
  automated match to d1o87a2
  protein/RNA complex; complexed with ca, gcp
2. Domain d2c04b2: 2c04 B:89-296 [129573]
  Other proteins in same PDB: d2c04a1, d2c04b1
  automated match to d1o87a2
  protein/RNA complex; complexed with ca, gcp

Domains for 2cnw:

Domain d2cnwa2: 2cnw A:89-293 [130650]
Other proteins in same PDB: d2cnwa1, d2cnwb1, d2cnwc1, d2cnwd1, d2cnwd2, d2cnwe1, d2cnwe2, d2cnwf1, d2cnwf2
automated match to d1okka2
protein/RNA complex; complexed with 5gp, alf, gdp, mg

Domain d2cnwb2: 2cnw B:89-293 [130652]
Other proteins in same PDB: d2cnwa1, d2cnwb1, d2cnwc1, d2cnwd1, d2cnwd2, d2cnwe1, d2cnwe2, d2cnwf1, d2cnwf2
automated match to d1okka2
protein/RNA complex; complexed with 5gp, alf, gdp, mg

Domain d2cnwc2: 2cnw C:89-293 [130654]
Other proteins in same PDB: d2cnwa1, d2cnwb1, d2cnwc1, d2cnwd1, d2cnwd2, d2cnwe1, d2cnwe2, d2cnwf1, d2cnwf2
automated match to d1okka2
protein/RNA complex; complexed with 5gp, alf, gdp, mg

Domains for 2ffh:
1. Domain d2ffha3: 2ffh A:89-307 [32276]
  Other proteins in same PDB: d2ffha1, d2ffha2, d2ffhb1, d2ffhb2, d2ffhc1, d2ffhc2
  complexed with cd, so4
2. Domain d2ffhb3: 2ffh B:89-307 [32277]
  Other proteins in same PDB: d2ffha1, d2ffha2, d2ffhb1, d2ffhb2, d2ffhc1, d2ffhc2
  complexed with cd, so4
3. Domain d2ffhc3: 2ffh C:89-307 [32278]
  Other proteins in same PDB: d2ffha1, d2ffha2, d2ffhb1, d2ffhb2, d2ffhc1, d2ffhc2
  complexed with cd, so4
Domain for 2iy3:
- Domain d2iy3a2: 2iy3 A:89-305 [137791]
  Other proteins in same PDB: d2iy3a1
  automatically matched to d2ffha3
  protein/RNA complex
Domains for 2j45:
1. Domain d2j45a2: 2j45 A:89-297 [137984]
  Other proteins in same PDB: d2j45a1, d2j45b1
  automated match to d1o87a2
  complexed with ca, edo, mes, mrd, na
2. Domain d2j45b2: 2j45 B:89-297 [137986]
  Other proteins in same PDB: d2j45a1, d2j45b1
  automated match to d1o87a2
  complexed with ca, edo, mes, mrd, na
Domains for 2j46:
1. Domain d2j46a2: 2j46 A:89-296 [137988]
  Other proteins in same PDB: d2j46a1, d2j46b1
  automated match to d1o87a2
  complexed with act, cl, mn, mrd
2. Domain d2j46b2: 2j46 B:89-297 [137990]
  Other proteins in same PDB: d2j46a1, d2j46b1
  automated match to d1o87a2
  complexed with act, cl, mn, mrd

Domains for 2j7p:

Domain d2j7pa2: 2j7p A:89-294 [138120]
Other proteins in same PDB: d2j7pa1, d2j7pb1, d2j7pd1, d2j7pd2, d2j7pe1, d2j7pe2
automated match to d1ng1a2
protein/RNA complex; complexed with edo, gnp, iod, k, mg

Domain d2j7pb2: 2j7p B:89-294 [138122]
Other proteins in same PDB: d2j7pa1, d2j7pb1, d2j7pd1, d2j7pd2, d2j7pe1, d2j7pe2
automated match to d1ng1a2
protein/RNA complex; complexed with edo, gnp, iod, k, mg

Domain for 2ng1:
- Domain d2ng1a2: 2ng1 A:89-294 [32273]
  Other proteins in same PDB: d2ng1a1
  complexed with dio, edo, gdp
Domains for 3ng1:
1. Domain d3ng1a2: 3ng1 A:89-294 [32274]
  Other proteins in same PDB: d3ng1a1, d3ng1b1
  complexed with cd, edo, so4
2. Domain d3ng1b2: 3ng1 B:89-294 [32275]
  Other proteins in same PDB: d3ng1a1, d3ng1b1
  complexed with cd, edo, so4

More info for Protein GTPase domain of the signal sequence recognition protein Ffh from c.37.1.10: Nitrogenase iron protein-like

Timeline for Protein GTPase domain of the signal sequence recognition protein Ffh from c.37.1.10: Nitrogenase iron protein-like:

Protein GTPase domain of the signal sequence recognition protein Ffh from c.37.1.10: Nitrogenase iron protein-like first appeared (with stable ids) in SCOP 1.55
Protein GTPase domain of the signal sequence recognition protein Ffh from c.37.1.10: Nitrogenase iron protein-like appears in SCOPe 2.04
Protein GTPase domain of the signal sequence recognition protein Ffh from c.37.1.10: Nitrogenase iron protein-like appears in SCOPe 2.06
Protein GTPase domain of the signal sequence recognition protein Ffh from c.37.1.10: Nitrogenase iron protein-like appears in the current release, SCOPe 2.08