Lineage for Protein: GTPase domain of the signal sequence recognition protein Ffh

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2109203Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2109204Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families) (S)
    division into families based on beta-sheet topologies
  5. 2111791Family c.37.1.10: Nitrogenase iron protein-like [52652] (16 protein domains)
    core: parallel beta-sheet of 7 strands; order 3241567
  6. 2111930Protein GTPase domain of the signal sequence recognition protein Ffh [52664] (3 species)

Species:

  1. 2111931Acidianus ambivalens [TaxId:2283] [64023] (2 PDB entries)
    1. Domain for 1j8m:
    2. Domain for 1j8y:
  2. 2111934Sulfolobus solfataricus [TaxId:2287] [102373] (2 PDB entries)
    1. Domains for 1qzw:
      1. 2111937Domain d1qzwa3: 1qzw A:88-294 [96701]
        Other proteins in same PDB: d1qzwa1, d1qzwa2, d1qzwc1, d1qzwc2, d1qzwe1, d1qzwe2, d1qzwg1, d1qzwg2
        protein/RNA complex
      2. 2111938Domain d1qzwc3: 1qzw C:88-294 [96704]
        Other proteins in same PDB: d1qzwa1, d1qzwa2, d1qzwc1, d1qzwc2, d1qzwe1, d1qzwe2, d1qzwg1, d1qzwg2
        protein/RNA complex
      3. 2111939Domain d1qzwe3: 1qzw E:88-294 [96707]
        Other proteins in same PDB: d1qzwa1, d1qzwa2, d1qzwc1, d1qzwc2, d1qzwe1, d1qzwe2, d1qzwg1, d1qzwg2
        protein/RNA complex
      4. 2111940Domain d1qzwg3: 1qzw G:88-294 [96710]
        Other proteins in same PDB: d1qzwa1, d1qzwa2, d1qzwc1, d1qzwc2, d1qzwe1, d1qzwe2, d1qzwg1, d1qzwg2
        protein/RNA complex
    2. Domains for 1qzx:
      1. 2111935Domain d1qzxa3: 1qzx A:88-294 [96713]
        Other proteins in same PDB: d1qzxa1, d1qzxa2, d1qzxb1, d1qzxb2
      2. 2111936Domain d1qzxb3: 1qzx B:88-294 [96716]
        Other proteins in same PDB: d1qzxa1, d1qzxa2, d1qzxb1, d1qzxb2
  3. 2111941Thermus aquaticus [TaxId:271] [52665] (17 PDB entries)
    1. Domain for 1ffh:
    2. Domain for 1jpj:
    3. Domains for 1jpn:
      1. 2111953Domain d1jpna2: 1jpn A:89-296 [67040]
        Other proteins in same PDB: d1jpna1, d1jpnb1
        complexed with acy, ca, gnp
      2. 2111954Domain d1jpnb2: 1jpn B:89-295 [67042]
        Other proteins in same PDB: d1jpna1, d1jpnb1
        complexed with acy, ca, gnp
    4. Domain for 1ls1:
    5. Domain for 1ng1:
    6. Domains for 1o87:
      1. 2111958Domain d1o87a2: 1o87 A:89-295 [92641]
        Other proteins in same PDB: d1o87a1, d1o87b1
        protein/RNA complex; complexed with cl, fmt, gdp, mg
      2. 2111959Domain d1o87b2: 1o87 B:89-295 [92643]
        Other proteins in same PDB: d1o87a1, d1o87b1
        protein/RNA complex; complexed with cl, fmt, gdp, mg
    7. Domain for 1okk:
    8. Domain for 1rj9:
    9. Domains for 2c04:
      1. 2111947Domain d2c04a2: 2c04 A:89-297 [129571]
        Other proteins in same PDB: d2c04a1, d2c04b1
        automated match to d1o87a2
        protein/RNA complex; complexed with ca, gcp
      2. 2111948Domain d2c04b2: 2c04 B:89-296 [129573]
        Other proteins in same PDB: d2c04a1, d2c04b1
        automated match to d1o87a2
        protein/RNA complex; complexed with ca, gcp
    10. Domains for 2cnw:
      1. 2111962Domain d2cnwa2: 2cnw A:89-293 [130650]
        Other proteins in same PDB: d2cnwa1, d2cnwb1, d2cnwc1, d2cnwd1, d2cnwd2, d2cnwe1, d2cnwe2, d2cnwf1, d2cnwf2
        automated match to d1okka2
        protein/RNA complex; complexed with 5gp, alf, gdp, mg
      2. 2111963Domain d2cnwb2: 2cnw B:89-293 [130652]
        Other proteins in same PDB: d2cnwa1, d2cnwb1, d2cnwc1, d2cnwd1, d2cnwd2, d2cnwe1, d2cnwe2, d2cnwf1, d2cnwf2
        automated match to d1okka2
        protein/RNA complex; complexed with 5gp, alf, gdp, mg
      3. 2111964Domain d2cnwc2: 2cnw C:89-293 [130654]
        Other proteins in same PDB: d2cnwa1, d2cnwb1, d2cnwc1, d2cnwd1, d2cnwd2, d2cnwe1, d2cnwe2, d2cnwf1, d2cnwf2
        automated match to d1okka2
        protein/RNA complex; complexed with 5gp, alf, gdp, mg
    11. Domains for 2ffh:
      1. 2111966Domain d2ffha3: 2ffh A:89-307 [32276]
        Other proteins in same PDB: d2ffha1, d2ffha2, d2ffhb1, d2ffhb2, d2ffhc1, d2ffhc2
        complexed with cd, so4
      2. 2111967Domain d2ffhb3: 2ffh B:89-307 [32277]
        Other proteins in same PDB: d2ffha1, d2ffha2, d2ffhb1, d2ffhb2, d2ffhc1, d2ffhc2
        complexed with cd, so4
      3. 2111968Domain d2ffhc3: 2ffh C:89-307 [32278]
        Other proteins in same PDB: d2ffha1, d2ffha2, d2ffhb1, d2ffhb2, d2ffhc1, d2ffhc2
        complexed with cd, so4
    12. Domain for 2iy3:
    13. Domains for 2j45:
      1. 2111943Domain d2j45a2: 2j45 A:89-297 [137984]
        Other proteins in same PDB: d2j45a1, d2j45b1
        automated match to d1o87a2
        complexed with ca, edo, mes, mrd, na
      2. 2111944Domain d2j45b2: 2j45 B:89-297 [137986]
        Other proteins in same PDB: d2j45a1, d2j45b1
        automated match to d1o87a2
        complexed with ca, edo, mes, mrd, na
    14. Domains for 2j46:
      1. 2111945Domain d2j46a2: 2j46 A:89-296 [137988]
        Other proteins in same PDB: d2j46a1, d2j46b1
        automated match to d1o87a2
        complexed with act, cl, mn, mrd
      2. 2111946Domain d2j46b2: 2j46 B:89-297 [137990]
        Other proteins in same PDB: d2j46a1, d2j46b1
        automated match to d1o87a2
        complexed with act, cl, mn, mrd
    15. Domains for 2j7p:
      1. 2111950Domain d2j7pa2: 2j7p A:89-294 [138120]
        Other proteins in same PDB: d2j7pa1, d2j7pb1, d2j7pd1, d2j7pd2, d2j7pe1, d2j7pe2
        automated match to d1ng1a2
        protein/RNA complex; complexed with edo, gnp, iod, k, mg
      2. 2111951Domain d2j7pb2: 2j7p B:89-294 [138122]
        Other proteins in same PDB: d2j7pa1, d2j7pb1, d2j7pd1, d2j7pd2, d2j7pe1, d2j7pe2
        automated match to d1ng1a2
        protein/RNA complex; complexed with edo, gnp, iod, k, mg
    16. Domain for 2ng1:
    17. Domains for 3ng1:
      1. 2111960Domain d3ng1a2: 3ng1 A:89-294 [32274]
        Other proteins in same PDB: d3ng1a1, d3ng1b1
        complexed with cd, edo, so4
      2. 2111961Domain d3ng1b2: 3ng1 B:89-294 [32275]
        Other proteins in same PDB: d3ng1a1, d3ng1b1
        complexed with cd, edo, so4

More info for Protein GTPase domain of the signal sequence recognition protein Ffh from c.37.1.10: Nitrogenase iron protein-like

Timeline for Protein GTPase domain of the signal sequence recognition protein Ffh from c.37.1.10: Nitrogenase iron protein-like: