Lineage for Family c.37.1.10: Nitrogenase iron protein-like

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1593542Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 1593543Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families) (S)
    division into families based on beta-sheet topologies
  5. 1595958Family c.37.1.10: Nitrogenase iron protein-like [52652] (16 proteins)
    core: parallel beta-sheet of 7 strands; order 3241567

Proteins:

  1. 1595959Adenylosuccinate synthetase, PurA [52655] (5 species)
    common fold is interrupted by an all-alpha subdomain, residues 100-200
    1. 1595960Species Escherichia coli [TaxId:562] [52656] (23 PDB entries)
    2. 1595989Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [102372] (1 PDB entry)
    3. 1595991Species Mouse (Mus musculus) [TaxId:10090] [69491] (9 PDB entries)
    4. 1596003Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [52657] (1 PDB entry)
    5. 1596006Species Wheat (Triticum aestivum) [TaxId:4565] [52658] (1 PDB entry)
  2. 1596009Arsenite-translocating ATPase ArsA [52668] (1 species)
    Duplication: consists of two domains of this fold arranged as the NIP subunits in the dimer
  3. 1596023ATP(GTP)-binding protein PAB0955 [142297] (1 species)
    PYRAB14380; belongs to Pfam PF03029
  4. 1596034Cell division regulator MinD [64019] (3 species)
    1. 1596035Species Archaeoglobus fulgidus [TaxId:2234] [64020] (1 PDB entry)
    2. 1596037Species Pyrococcus furiosus [TaxId:2261] [64021] (2 PDB entries)
    3. 1596040Species Pyrococcus horikoshii [TaxId:53953] [64022] (1 PDB entry)
  5. 1596042CTP synthase PyrG, N-terminal domain [110551] (3 species)
    1. 1596043Species Escherichia coli [TaxId:562] [110552] (1 PDB entry)
      Uniprot P08398
    2. 1596046Species Human (Homo sapiens) [TaxId:9606] [159561] (1 PDB entry)
      Uniprot Q5VW67 1-273
    3. 1596049Species Thermus thermophilus [TaxId:274] [110553] (3 PDB entries)
      Uniprot Q5SIA8
  6. 1596053Dethiobiotin synthetase [52653] (1 species)
  7. 1596068Formyltetrahydrofolate synthetase [52659] (1 species)
    modified P-loop; there are many insertions in the common fold
  8. 1596076GTPase domain of the signal recognition particle receptor FtsY [52666] (3 species)
    1. 1596077Species Escherichia coli [TaxId:562] [52667] (2 PDB entries)
    2. 1596080Species Thermotoga maritima [TaxId:2336] [110550] (1 PDB entry)
      Uniprot Q9WZ40
    3. 1596083Species Thermus aquaticus [TaxId:271] [102374] (4 PDB entries)
  9. 1596089GTPase domain of the signal sequence recognition protein Ffh [52664] (3 species)
    1. 1596090Species Acidianus ambivalens [TaxId:2283] [64023] (2 PDB entries)
    2. 1596093Species Sulfolobus solfataricus [TaxId:2287] [102373] (2 PDB entries)
    3. 1596100Species Thermus aquaticus [TaxId:271] [52665] (17 PDB entries)
  10. 1596129Hypothetical protein TM0796 [142299] (1 species)
    member of Pfam PF07755; DUF1611; contains extra N-terminal alpha/beta fold of Rossmann-fold topology, parallel beta-sheet, strand order 312456
  11. 1596133Hypothetical protein YjiA, N-terminal domain [89671] (1 species)
    homologue of the cobalamin biosynthesis protein CobW
  12. 1596140LAO/AO transport system kinase ArgK [159562] (1 species)
    member of Pfam PF03308; contains extra N-terminal 3-helical bundle and extra C-terminal helical dimerisation domain
  13. 1596143Metallochaperone MeaB [159564] (1 species)
    ArgK-like (sub)family; Pfam PF03308
  14. 1596157Molybdopterin-guanine dinucleotide biosynthesis protein MobB [89673] (2 species)
    forms segment-swapped dimer
    1. 1596158Species Bacillus stearothermophilus [TaxId:1422] [117539] (1 PDB entry)
      Uniprot Q5L1X2 # 91% sequence identity
    2. 1596160Species Escherichia coli [TaxId:562] [89674] (2 PDB entries)
  15. 1596165Nitrogenase iron protein [52661] (2 species)
    1. 1596166Species Azotobacter vinelandii [TaxId:354] [52662] (20 PDB entries)
    2. 1596235Species Clostridium pasteurianum [TaxId:1501] [52663] (1 PDB entry)
  16. automated matches [190304] (7 species)
    not a true protein
    1. 1596239Species Escherichia coli K-12 [TaxId:83333] [229053] (2 PDB entries)
    2. 1596243Species Escherichia coli [TaxId:562] [187113] (1 PDB entry)
    3. 1596245Species Human (Homo sapiens) [TaxId:9606] [189076] (2 PDB entries)
    4. 1596249Species Moorella thermoacetica [TaxId:1525] [189834] (7 PDB entries)
    5. 1596263Species Moorella thermoacetica [TaxId:264732] [196795] (3 PDB entries)
    6. Species Thermus aquaticus [TaxId:271] [255076] (3 PDB entries)
    7. 1596275Species Yersinia pestis [TaxId:214092] [188914] (1 PDB entry)

More info for Family c.37.1.10: Nitrogenase iron protein-like

Timeline for Family c.37.1.10: Nitrogenase iron protein-like: