Lineage for Protein: ADP-ribosylation factor

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 987024Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 987025Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families) (S)
    division into families based on beta-sheet topologies
  5. 987698Family c.37.1.8: G proteins [52592] (79 proteins)
    core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest
  6. 987699Protein ADP-ribosylation factor [52614] (15 species)

Species:

  1. 987700Baker's yeast (Saccharomyces cerevisiae), ARF2 [TaxId:4932] [82401] (1 PDB entry)
  2. 987702Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId:4932] [82402] (1 PDB entry)
  3. 987705Human (Homo sapiens) [TaxId:9606] [142220] (1 PDB entry)
    Uniprot P84085 6-179
  4. 987707Human (Homo sapiens), ARF1 [TaxId:9606] [52615] (9 PDB entries)
    Uniprot P32889
    1. Domains for 1hur:
      1. 987721Domain d1hura_: 1hur A: [32052]
        complexed with gdp, mg
      2. 987722Domain d1hurb_: 1hur B: [32053]
        complexed with gdp, mg
    2. Domain for 1j2j:
    3. Domains for 1o3y:
      1. 987709Domain d1o3ya_: 1o3y A: [86618]
        complexed with gtp, mg
      2. 987710Domain d1o3yb_: 1o3y B: [86619]
        complexed with gtp, mg
    4. Domains for 1r8q:
      1. 987713Domain d1r8qa_: 1r8q A: [97243]
        Other proteins in same PDB: d1r8qe_, d1r8qf_
        complexed with a sec7 domain
        complexed with afb, g3d, mg, zn
      2. 987714Domain d1r8qb_: 1r8q B: [97244]
        Other proteins in same PDB: d1r8qe_, d1r8qf_
        complexed with a sec7 domain
        complexed with afb, g3d, mg, zn
    5. Domain for 1r8s:
      • 987708Domain d1r8sa_: 1r8s A: [97247]
        Other proteins in same PDB: d1r8se_
        complexed with a sec7 domain
        complexed with bme, fmt, gdp, so3, so4; mutant
    6. Domain for 1re0:
      • 987723Domain d1re0a_: 1re0 A: [97317]
        Other proteins in same PDB: d1re0b_
        complexed with a sec7 domain
        complexed with afb, cit, gdp, mg
    7. Domain for 1s9d:
      • 987712Domain d1s9da_: 1s9d A: [98750]
        Other proteins in same PDB: d1s9de_
        complexed with a sec7 domain
        complexed with afb, gdp, mg
    8. Domain for 1u81:
    9. Domains for 2j59:
      1. 987715Domain d2j59a_: 2j59 A: [138029]
        Other proteins in same PDB: d2j59m1, d2j59n1, d2j59o1, d2j59p1, d2j59q1, d2j59r1
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
      2. 987716Domain d2j59b_: 2j59 B: [138030]
        Other proteins in same PDB: d2j59m1, d2j59n1, d2j59o1, d2j59p1, d2j59q1, d2j59r1
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
      3. 987717Domain d2j59c_: 2j59 C: [138031]
        Other proteins in same PDB: d2j59m1, d2j59n1, d2j59o1, d2j59p1, d2j59q1, d2j59r1
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
      4. 987718Domain d2j59d_: 2j59 D: [138032]
        Other proteins in same PDB: d2j59m1, d2j59n1, d2j59o1, d2j59p1, d2j59q1, d2j59r1
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
      5. 987719Domain d2j59e_: 2j59 E: [138033]
        Other proteins in same PDB: d2j59m1, d2j59n1, d2j59o1, d2j59p1, d2j59q1, d2j59r1
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
      6. 987720Domain d2j59f_: 2j59 F: [138034]
        Other proteins in same PDB: d2j59m1, d2j59n1, d2j59o1, d2j59p1, d2j59q1, d2j59r1
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
  5. 987725Human (Homo sapiens), ARF4 [TaxId:9606] [142217] (1 PDB entry)
    Uniprot P18085 3-177
  6. 987728Human (Homo sapiens), ARF6 [TaxId:9606] [52617] (5 PDB entries)
    1. Domain for 1e0s:
    2. Domain for 2a5d:
    3. Domain for 2a5f:
    4. Domain for 2a5g:
    5. Domains for 2j5x:
      1. 987733Domain d2j5xa_: 2j5x A: [138072]
        automated match to d1e0sa_
        complexed with gsp, mg
      2. 987734Domain d2j5xb_: 2j5x B: [138073]
        automated match to d1e0sa_
        complexed with gsp, mg
  7. 987735Human (Homo sapiens), ARL1 [TaxId:9606] [102364] (2 PDB entries)
    1. Domains for 1r4a:
      1. 987740Domain d1r4aa_: 1r4a A: [96986]
        Other proteins in same PDB: d1r4ae_, d1r4af_, d1r4ag_, d1r4ah_
        complexed with gnp, mg
      2. 987741Domain d1r4ab_: 1r4a B: [96987]
        Other proteins in same PDB: d1r4ae_, d1r4af_, d1r4ag_, d1r4ah_
        complexed with gnp, mg
      3. 987742Domain d1r4ac_: 1r4a C: [96988]
        Other proteins in same PDB: d1r4ae_, d1r4af_, d1r4ag_, d1r4ah_
        complexed with gnp, mg
      4. 987743Domain d1r4ad_: 1r4a D: [96989]
        Other proteins in same PDB: d1r4ae_, d1r4af_, d1r4ag_, d1r4ah_
        complexed with gnp, mg
    2. Domains for 1upt:
      1. 987736Domain d1upta_: 1upt A: [99767]
        Other proteins in same PDB: d1uptb_, d1uptd_, d1uptf_, d1upth_
        complexed with gtp, mg
      2. 987737Domain d1uptc_: 1upt C: [99769]
        Other proteins in same PDB: d1uptb_, d1uptd_, d1uptf_, d1upth_
        complexed with gtp, mg
      3. 987738Domain d1upte_: 1upt E: [99771]
        Other proteins in same PDB: d1uptb_, d1uptd_, d1uptf_, d1upth_
        complexed with gtp, mg
      4. 987739Domain d1uptg_: 1upt G: [99773]
        Other proteins in same PDB: d1uptb_, d1uptd_, d1uptf_, d1upth_
        complexed with gtp, mg
  8. 987744Human (Homo sapiens), ARL5A [TaxId:9606] [142218] (1 PDB entry)
    Uniprot Q9Y689 2-178
  9. 987746Human (Homo sapiens), ARL5B [TaxId:9606] [142221] (1 PDB entry)
    Uniprot Q96KC2 6-173
  10. 987748Human (Homo sapiens), ARL8A [TaxId:9606] [142219] (1 PDB entry)
    Uniprot Q96BM9 18-181
  11. 987750Human (Homo sapiens), ARL8B [TaxId:9606] [142222] (1 PDB entry)
    Uniprot Q9NVJ2 18-182
  12. 987752Mouse (Mus musculus), ARL2 [TaxId:10090] [75203] (3 PDB entries)
    1. Domain for 1ksg:
      • 987754Domain d1ksga_: 1ksg A: [72912]
        Other proteins in same PDB: d1ksgb_
        complexed with GMP-PDE delta
        complexed with gtp, mg
    2. Domain for 1ksh:
      • 987753Domain d1ksha_: 1ksh A: [72914]
        Other proteins in same PDB: d1kshb_
        complexed with GMP-PDE delta
        complexed with gdp, mg, po4
    3. Domain for 1ksj:
      • 987755Domain d1ksja_: 1ksj A: [72916]
        Other proteins in same PDB: d1ksjb_
        complexed with GMP-PDE delta
        complexed with bme, gdp, gtp, mg, po4
  13. 987756Mouse (Mus musculus), ARL3 [TaxId:10090] [52618] (2 PDB entries)
    1. Domain for 1fzq:
    2. Domain for 3bh7:
  14. 987759Rat (Rattus norvegicus), ARF1 [TaxId:10116] [52616] (2 PDB entries)
    1. Domain for 1rrf:
    2. Domains for 1rrg:
      1. 987760Domain d1rrga_: 1rrg A: [32054]
        complexed with gdp, mg
      2. 987761Domain d1rrgb_: 1rrg B: [32055]
        complexed with gdp, mg
  15. 987763Thale cress (Arabidopsis thaliana) [TaxId:3702] [189615] (1 PDB entry)

More info for Protein ADP-ribosylation factor from c.37.1.8: G proteins

Timeline for Protein ADP-ribosylation factor from c.37.1.8: G proteins: