Lineage for Protein: ADP-ribosylation factor

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2109203Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2109204Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families) (S)
    division into families based on beta-sheet topologies
  5. 2110099Family c.37.1.8: G proteins [52592] (79 protein domains)
    core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest
  6. 2110100Protein ADP-ribosylation factor [52614] (16 species)

Species:

  1. 2110101Baker's yeast (Saccharomyces cerevisiae), ARF2 [TaxId:4932] [82401] (1 PDB entry)
  2. 2110103Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId:4932] [82402] (1 PDB entry)
  3. 2110106Human (Homo sapiens) [TaxId:9606] [142220] (2 PDB entries)
    1. Domain for 2b6h:
    2. Domains for 4dcn:
      1. 2110108Domain d4dcna_: 4dcn A: [251398]
        Other proteins in same PDB: d4dcnc_, d4dcnd_
        automated match to d1mr3f_
        complexed with gnp, mg
      2. 2110109Domain d4dcnb_: 4dcn B: [251399]
        Other proteins in same PDB: d4dcnc_, d4dcnd_
        automated match to d1mr3f_
        complexed with gnp, mg
  4. 2110110Human (Homo sapiens), ARF1 [TaxId:9606] [52615] (14 PDB entries)
    Uniprot P32889
    1. Domains for 1hur:
      1. 2110130Domain d1hura_: 1hur A: [32052]
        complexed with gdp, mg
      2. 2110131Domain d1hurb_: 1hur B: [32053]
        complexed with gdp, mg
    2. Domains for 1j2i:
      1. 2110112Domain d1j2ia1: 1j2i A:18-181 [302526]
        Other proteins in same PDB: d1j2ia2, d1j2ib2
        automated match to d1o3ya_
        complexed with gtp, mg
      2. 2110113Domain d1j2ib1: 1j2i B:18-181 [302528]
        Other proteins in same PDB: d1j2ia2, d1j2ib2
        automated match to d1o3ya_
        complexed with gtp, mg
    3. Domain for 1j2j:
    4. Domains for 1o3y:
      1. 2110114Domain d1o3ya1: 1o3y A:18-181 [86618]
        Other proteins in same PDB: d1o3ya2, d1o3yb2
        complexed with gtp, mg
      2. 2110115Domain d1o3yb1: 1o3y B:18-181 [86619]
        Other proteins in same PDB: d1o3ya2, d1o3yb2
        complexed with gtp, mg
    5. Domains for 1r8q:
      1. 2110121Domain d1r8qa_: 1r8q A: [97243]
        Other proteins in same PDB: d1r8qe_, d1r8qf_
        complexed with a sec7 domain
        complexed with afb, g3d, mg, zn
      2. 2110122Domain d1r8qb_: 1r8q B: [97244]
        Other proteins in same PDB: d1r8qe_, d1r8qf_
        complexed with a sec7 domain
        complexed with afb, g3d, mg, zn
    6. Domain for 1r8r:
    7. Domain for 1r8s:
      • 2110111Domain d1r8sa_: 1r8s A: [97247]
        Other proteins in same PDB: d1r8se_
        complexed with a sec7 domain
        complexed with bme, fmt, gdp, so3, so4; mutant
    8. Domain for 1re0:
    9. Domain for 1s9d:
      • 2110119Domain d1s9da_: 1s9d A: [98750]
        Other proteins in same PDB: d1s9de_
        complexed with a sec7 domain
        complexed with afb, gdp, mg
    10. Domain for 1u81:
    11. Domains for 2j59:
      1. 2110124Domain d2j59a2: 2j59 A:18-180 [138029]
        Other proteins in same PDB: d2j59a3, d2j59b3, d2j59c3, d2j59d3, d2j59e3, d2j59f3, d2j59m1, d2j59n_, d2j59o_, d2j59p_, d2j59q_, d2j59r_
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
      2. 2110125Domain d2j59b2: 2j59 B:18-180 [138030]
        Other proteins in same PDB: d2j59a3, d2j59b3, d2j59c3, d2j59d3, d2j59e3, d2j59f3, d2j59m1, d2j59n_, d2j59o_, d2j59p_, d2j59q_, d2j59r_
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
      3. 2110126Domain d2j59c2: 2j59 C:18-180 [138031]
        Other proteins in same PDB: d2j59a3, d2j59b3, d2j59c3, d2j59d3, d2j59e3, d2j59f3, d2j59m1, d2j59n_, d2j59o_, d2j59p_, d2j59q_, d2j59r_
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
      4. 2110127Domain d2j59d2: 2j59 D:18-180 [138032]
        Other proteins in same PDB: d2j59a3, d2j59b3, d2j59c3, d2j59d3, d2j59e3, d2j59f3, d2j59m1, d2j59n_, d2j59o_, d2j59p_, d2j59q_, d2j59r_
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
      5. 2110128Domain d2j59e2: 2j59 E:18-180 [138033]
        Other proteins in same PDB: d2j59a3, d2j59b3, d2j59c3, d2j59d3, d2j59e3, d2j59f3, d2j59m1, d2j59n_, d2j59o_, d2j59p_, d2j59q_, d2j59r_
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
      6. 2110129Domain d2j59f2: 2j59 F:18-180 [138034]
        Other proteins in same PDB: d2j59a3, d2j59b3, d2j59c3, d2j59d3, d2j59e3, d2j59f3, d2j59m1, d2j59n_, d2j59o_, d2j59p_, d2j59q_, d2j59r_
        automated match to d1o3ya_
        complexed with dio, edo, gtp, mg, so4
    12. Domains for 3n5c:
      1. 2110117Domain d3n5ca_: 3n5c A: [213745]
        automated match to d1re0a_
        complexed with cl, gdp
      2. 2110118Domain d3n5cb_: 3n5c B: [213746]
        automated match to d1re0a_
        complexed with cl, gdp
    13. Domain for 3pcr:
    14. Domain for 4kax:
  5. 2110135Human (Homo sapiens), ARF4 [TaxId:9606] [142217] (1 PDB entry)
    Uniprot P18085 3-177
  6. 2110138Human (Homo sapiens), ARF6 [TaxId:9606] [52617] (5 PDB entries)
    1. Domain for 1e0s:
    2. Domain for 2a5d:
    3. Domain for 2a5f:
    4. Domain for 2a5g:
    5. Domains for 2j5x:
      1. 2110143Domain d2j5xa_: 2j5x A: [138072]
        automated match to d1e0sa_
        complexed with gsp, mg
      2. 2110144Domain d2j5xb_: 2j5x B: [138073]
        automated match to d1e0sa_
        complexed with gsp, mg
  7. 2110145Human (Homo sapiens), ARL1 [TaxId:9606] [102364] (3 PDB entries)
    1. Domains for 1r4a:
      1. 2110150Domain d1r4aa_: 1r4a A: [96986]
        Other proteins in same PDB: d1r4ae_, d1r4af_, d1r4ag_, d1r4ah_
        complexed with gnp, mg
      2. 2110151Domain d1r4ab_: 1r4a B: [96987]
        Other proteins in same PDB: d1r4ae_, d1r4af_, d1r4ag_, d1r4ah_
        complexed with gnp, mg
      3. 2110152Domain d1r4ac_: 1r4a C: [96988]
        Other proteins in same PDB: d1r4ae_, d1r4af_, d1r4ag_, d1r4ah_
        complexed with gnp, mg
      4. 2110153Domain d1r4ad_: 1r4a D: [96989]
        Other proteins in same PDB: d1r4ae_, d1r4af_, d1r4ag_, d1r4ah_
        complexed with gnp, mg
    2. Domains for 1upt:
      1. 2110146Domain d1upta_: 1upt A: [99767]
        Other proteins in same PDB: d1uptb_, d1uptd_, d1uptf_, d1upth_
        complexed with gtp, mg
      2. 2110147Domain d1uptc_: 1upt C: [99769]
        Other proteins in same PDB: d1uptb_, d1uptd_, d1uptf_, d1upth_
        complexed with gtp, mg
      3. 2110148Domain d1upte_: 1upt E: [99771]
        Other proteins in same PDB: d1uptb_, d1uptd_, d1uptf_, d1upth_
        complexed with gtp, mg
      4. 2110149Domain d1uptg_: 1upt G: [99773]
        Other proteins in same PDB: d1uptb_, d1uptd_, d1uptf_, d1upth_
        complexed with gtp, mg
    3. Domain for 5ee5:
  8. 2110154Human (Homo sapiens), ARL5A [TaxId:9606] [142218] (1 PDB entry)
    Uniprot Q9Y689 2-178
  9. 2110156Human (Homo sapiens), ARL5B [TaxId:9606] [142221] (1 PDB entry)
    Uniprot Q96KC2 6-173
  10. 2110158Human (Homo sapiens), ARL8A [TaxId:9606] [142219] (1 PDB entry)
    Uniprot Q96BM9 18-181
  11. 2110160Human (Homo sapiens), ARL8B [TaxId:9606] [142222] (1 PDB entry)
    Uniprot Q9NVJ2 18-182
  12. 2110162Mouse (Mus musculus) [TaxId:10090] [225429] (3 PDB entries)
    1. Domain for 3bh6:
    2. Domain for 3bh7:
    3. Domains for 3vhx:
      1. 2110164Domain d3vhxa1: 3vhx A:13-173 [217820]
        Other proteins in same PDB: d3vhxa2, d3vhxc2, d3vhxe2, d3vhxg2
        automated match to d1upta_
        complexed with gol, gtp, mg
      2. 2110165Domain d3vhxc1: 3vhx C:13-173 [217821]
        Other proteins in same PDB: d3vhxa2, d3vhxc2, d3vhxe2, d3vhxg2
        automated match to d1upta_
        complexed with gol, gtp, mg
      3. 2110166Domain d3vhxe1: 3vhx E:13-173 [217822]
        Other proteins in same PDB: d3vhxa2, d3vhxc2, d3vhxe2, d3vhxg2
        automated match to d1upta_
        complexed with gol, gtp, mg
      4. 2110167Domain d3vhxg1: 3vhx G:13-173 [217823]
        Other proteins in same PDB: d3vhxa2, d3vhxc2, d3vhxe2, d3vhxg2
        automated match to d1upta_
        complexed with gol, gtp, mg
  13. 2110169Mouse (Mus musculus), ARL2 [TaxId:10090] [75203] (5 PDB entries)
    1. Domain for 1ksg:
    2. Domain for 1ksh:
      • 2110170Domain d1ksha_: 1ksh A: [72914]
        Other proteins in same PDB: d1kshb_
        complexed with GMP-PDE delta
        complexed with gdp, mg, po4
    3. Domain for 1ksj:
      • 2110176Domain d1ksja_: 1ksj A: [72916]
        Other proteins in same PDB: d1ksjb_
        complexed with GMP-PDE delta
        complexed with bme, gdp, gtp, mg, po4
    4. Domains for 4gok:
      1. 2110174Domain d4goka_: 4gok A: [222059]
        automated match to d2rhda_
        complexed with gnp, mg
      2. 2110175Domain d4gokb_: 4gok B: [222060]
        automated match to d2rhda_
        complexed with gnp, mg
    5. Domains for 4zi2:
      1. 2110172Domain d4zi2a1: 4zi2 A:3-182 [279400]
        Other proteins in same PDB: d4zi2a2
        automated match to d1ksga_
        complexed with gnp, mg
      2. 2110173Domain d4zi2b_: 4zi2 B: [279399]
        Other proteins in same PDB: d4zi2a2
        automated match to d1ksga_
        complexed with gnp, mg
  14. 2110177Mouse (Mus musculus), ARL3 [TaxId:10090] [52618] (3 PDB entries)
    1. Domain for 1fzq:
    2. Domains for 4goj:
      1. 2110179Domain d4goja_: 4goj A: [194686]
        automated match to d1fzqa_
        complexed with gnp, mg
      2. 2110180Domain d4gojb_: 4goj B: [202280]
        automated match to d4goja_
        complexed with gnp, mg
    3. Domains for 4zi3:
      1. 2269017Domain d4zi3b_: 4zi3 B: [312323]
        Other proteins in same PDB: d4zi3a2
        automated match to d1fzqa_
        complexed with gnp, mg
      2. 2269027Domain d4zi3a1: 4zi3 A:3-182 [312333]
        Other proteins in same PDB: d4zi3a2
        automated match to d1fzqa_
        complexed with gnp, mg
  15. 2110181Norway rat (Rattus norvegicus), ARF1 [TaxId:10116] [52616] (2 PDB entries)
    1. Domain for 1rrf:
    2. Domains for 1rrg:
      1. 2110182Domain d1rrga_: 1rrg A: [32054]
        complexed with gdp, mg
      2. 2110183Domain d1rrgb_: 1rrg B: [32055]
        complexed with gdp, mg
  16. 2110185Thale cress (Arabidopsis thaliana) [TaxId:3702] [189615] (1 PDB entry)

More info for Protein ADP-ribosylation factor from c.37.1.8: G proteins

Timeline for Protein ADP-ribosylation factor from c.37.1.8: G proteins: