SCOPe 2.03: Protein: Adenylate kinase

Lineage for Protein: Adenylate kinase

Root: SCOPe 2.03
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families)
division into families based on beta-sheet topologies
Family c.37.1.1: Nucleotide and nucleoside kinases [52541] (21 proteins)
parallel beta-sheet of 5 strands, order 23145
Protein Adenylate kinase [52554] (15 species)

Species:

Bacillus globisporus [TaxId:1459] [102342] (1 PDB entry)
contains a zinc-finger subdomain, residues 126-160
- Domain for 1s3g:
  - Domain d1s3ga1: 1s3g A:1-125,A:161-217 [98433]
    Other proteins in same PDB: d1s3ga2
    complexed with ap5, zn
Bacillus stearothermophilus [TaxId:1422] [52562] (3 PDB entries)
contains a zinc-finger subdomain, residues 126-160
1. Domain for 1zin:
  - Domain d1zina1: 1zin A:1-125,A:161-217 [31915]
    Other proteins in same PDB: d1zina2
    complexed with ap5, zn
2. Domain for 1zio:
  - Domain d1zioa1: 1zio A:1-125,A:161-217 [31917]
    Other proteins in same PDB: d1zioa2
    complexed with ap5, mg, zn
3. Domain for 1zip:
  - Domain d1zipa1: 1zip A:1-125,A:161-217 [31916]
    Other proteins in same PDB: d1zipa2
    complexed with ap5, mn, zn
Bacillus subtilis [TaxId:1423] [102341] (1 PDB entry)
contains a zinc-finger subdomain, residues 126-160
- Domain for 1p3j:
  - Domain d1p3ja1: 1p3j A:1-125,A:161-212 [94022]
    Other proteins in same PDB: d1p3ja2
    complexed with ap5, mg, zn
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [52559] (4 PDB entries)
contains a rudiment "zinc-finger" subdomain, residue 131-168
1. Domain for 1aky:
  - Domain d1akya1: 1aky A:3-130,A:169-220 [31896]
    Other proteins in same PDB: d1akya2
    complexed with ap5, imd
2. Domains for 1dvr:
  1. Domain d1dvra1: 1dvr A:1-130,A:169-220 [31899]
    Other proteins in same PDB: d1dvra2, d1dvrb2
    complexed with atf; mutant
  2. Domain d1dvrb1: 1dvr B:1-130,B:169-220 [31900]
    Other proteins in same PDB: d1dvra2, d1dvrb2
    complexed with atf; mutant
3. Domain for 2aky:
  - Domain d2akya1: 2aky A:3-130,A:169-220 [31897]
    Other proteins in same PDB: d2akya2
    complexed with ap5, mg
4. Domain for 3aky:
  - Domain d3akya1: 3aky A:3-130,A:169-220 [31898]
    Other proteins in same PDB: d3akya2
    complexed with ap5, imd; mutant
Cow (Bos taurus), mitochondrial izozyme-2 [TaxId:9913] [52558] (2 PDB entries)
contains a rudiment "zinc-finger" subdomain, residue 147-176
1. Domain for 1ak2:
  - Domain d1ak2a1: 1ak2 A:14-146,A:177-233 [31894]
    Other proteins in same PDB: d1ak2a2
    complexed with so4
2. Domain for 2ak2:
  - Domain d2ak2a1: 2ak2 A:14-146,A:177-233 [31895]
    Other proteins in same PDB: d2ak2a2
    complexed with so4
Cow (Bos taurus), mitochondrial izozyme-3 [TaxId:9913] [52557] (1 PDB entry)
contains a rudiment "zinc-finger" subdomain, residue 125-161
- Domains for 2ak3:
  1. Domain d2ak3a1: 2ak3 A:0-124,A:162-225 [31892]
    Other proteins in same PDB: d2ak3a2, d2ak3b2
    complexed with amp, so4
  2. Domain d2ak3b1: 2ak3 B:0-124,B:162-220 [31893]
    Other proteins in same PDB: d2ak3a2, d2ak3b2
    complexed with amp, so4
Escherichia coli [TaxId:562] [52560] (7 PDB entries)
contains a rudiment "zinc-finger" subdomain, residue 122-156
1. Domains for 1ake:
  1. Domain d1akea1: 1ake A:1-121,A:157-214 [31905]
    Other proteins in same PDB: d1akea2, d1akeb2
    complexed with ap5
  2. Domain d1akeb1: 1ake B:1-121,B:157-214 [31906]
    Other proteins in same PDB: d1akea2, d1akeb2
    complexed with ap5
2. Domains for 1ank:
  1. Domain d1anka1: 1ank A:1-121,A:157-214 [31907]
    Other proteins in same PDB: d1anka2, d1ankb2
    complexed with amp, anp
  2. Domain d1ankb1: 1ank B:1-121,B:157-214 [31908]
    Other proteins in same PDB: d1anka2, d1ankb2
    complexed with amp, anp
3. Domains for 1e4v:
  1. Domain d1e4va1: 1e4v A:1-121,A:157-214 [31903]
    Other proteins in same PDB: d1e4va2, d1e4vb2
    complexed with ap5; mutant
  2. Domain d1e4vb1: 1e4v B:1-121,B:157-214 [31904]
    Other proteins in same PDB: d1e4va2, d1e4vb2
    complexed with ap5; mutant
4. Domains for 1e4y:
  1. Domain d1e4ya1: 1e4y A:1-121,A:157-214 [31901]
    Other proteins in same PDB: d1e4ya2, d1e4yb2
    complexed with ap5; mutant
  2. Domain d1e4yb1: 1e4y B:1-121,B:157-214 [31902]
    Other proteins in same PDB: d1e4ya2, d1e4yb2
    complexed with ap5; mutant
5. Domains for 2eck:
  1. Domain d2ecka1: 2eck A:1-121,A:157-214 [31911]
    Other proteins in same PDB: d2ecka2, d2eckb2
    complexed with adp, amp
  2. Domain d2eckb1: 2eck B:1-121,B:157-214 [31912]
    Other proteins in same PDB: d2ecka2, d2eckb2
    complexed with adp, amp
6. Domains for 3hpq:
  1. Domain d3hpqa1: 3hpq A:1-121,A:157-214 [211182]
    Other proteins in same PDB: d3hpqa2, d3hpqb2
    automated match to d1akea1
    complexed with ap5
  2. Domain d3hpqb1: 3hpq B:1-121,B:157-214 [211184]
    Other proteins in same PDB: d3hpqa2, d3hpqb2
    automated match to d1akea1
    complexed with ap5
7. Domains for 4ake:
  1. Domain d4akea1: 4ake A:1-121,A:157-214 [31909]
    Other proteins in same PDB: d4akea2, d4akeb2
  2. Domain d4akeb1: 4ake B:1-121,B:157-214 [31910]
    Other proteins in same PDB: d4akea2, d4akeb2
Human (Homo sapiens), isoenzyme 6 [TaxId:9606] [117527] (1 PDB entry)
Uniprot Q9Y3D8
- Domain for 1rkb:
  - Domain d1rkba_: 1rkb A: [111854]
    complexed with li, so4
Maize (Zea mays) [TaxId:4577] [52561] (1 PDB entry)
- Domains for 1zak:
  1. Domain d1zaka1: 1zak A:3-127,A:159-222 [31913]
    Other proteins in same PDB: d1zaka2, d1zakb2
    contains a rudiment "zinc-finger" subdomain, residue 128-158
    complexed with ap5
  2. Domain d1zakb1: 1zak B:3-127,B:159-222 [31914]
    Other proteins in same PDB: d1zaka2, d1zakb2
    contains a rudiment "zinc-finger" subdomain, residue 128-158
    complexed with ap5
Methanococcus thermolithotrophicus [TaxId:2186] [89661] (1 PDB entry)
- Domains for 1ki9:
  1. Domain d1ki9a_: 1ki9 A: [84404]
  2. Domain d1ki9b_: 1ki9 B: [84405]
  3. Domain d1ki9c_: 1ki9 C: [84406]
Methanococcus voltae [TaxId:2188] [89660] (1 PDB entry)
- Domains for 1kht:
  1. Domain d1khta_: 1kht A: [84401]
    complexed with amp
  2. Domain d1khtb_: 1kht B: [84402]
    complexed with amp
  3. Domain d1khtc_: 1kht C: [84403]
    complexed with amp
Mycobacterium tuberculosis [TaxId:1773] [102343] (2 PDB entries)
contains no zinc finger-like insertion
1. Domain for 1p4s:
  - Domain d1p4sa_: 1p4s A: [94117]
2. Domain for 2cdn:
  - Domain d2cdna_: 2cdn A: [130289]
    complexed with adp, mg
Pig (Sus scrofa) [TaxId:9823] [52555] (1 PDB entry)
- Domain for 3adk:
  - Domain d3adka_: 3adk A: [31885]
    complexed with so4
Sulfolobus acidocaldarius [TaxId:2285] [52556] (1 PDB entry)
- Domains for 1nks:
  1. Domain d1nksa_: 1nks A: [31886]
    complexed with adp, amp
  2. Domain d1nksb_: 1nks B: [31887]
    complexed with adp, amp
  3. Domain d1nksc_: 1nks C: [31888]
    complexed with adp, amp
  4. Domain d1nksd_: 1nks D: [31889]
    complexed with adp, amp
  5. Domain d1nkse_: 1nks E: [31890]
    complexed with adp, amp
  6. Domain d1nksf_: 1nks F: [31891]
    complexed with adp, amp
Thermus thermophilus [TaxId:274] [188607] (1 PDB entry)
- Domain for 3cm0:
  - Domain d3cm0a_: 3cm0 A: [173321]
    automated match to d1p4sa_

More info for Protein Adenylate kinase from c.37.1.1: Nucleotide and nucleoside kinases

Timeline for Protein Adenylate kinase from c.37.1.1: Nucleotide and nucleoside kinases:

Protein Adenylate kinase from c.37.1.1: Nucleotide and nucleoside kinases first appeared (with stable ids) in SCOP 1.55
Protein Adenylate kinase from c.37.1.1: Nucleotide and nucleoside kinases appears in SCOPe 2.02
Protein Adenylate kinase from c.37.1.1: Nucleotide and nucleoside kinases appears in SCOPe 2.04
Protein Adenylate kinase from c.37.1.1: Nucleotide and nucleoside kinases appears in the current release, SCOPe 2.08