Lineage for Protein: Adenylate kinase

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2109203Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2109204Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families) (S)
    division into families based on beta-sheet topologies
  5. 2109205Family c.37.1.1: Nucleotide and nucleoside kinases [52541] (21 protein domains)
    parallel beta-sheet of 5 strands, order 23145
  6. 2109210Protein Adenylate kinase [52554] (16 species)

Species:

  1. 2109211Bacillus globisporus [TaxId:1459] [102342] (1 PDB entry)
    contains a zinc-finger subdomain, residues 126-160
  2. 2109213Bacillus stearothermophilus [TaxId:1422] [52562] (3 PDB entries)
    contains a zinc-finger subdomain, residues 126-160
    1. Domain for 1zin:
    2. Domain for 1zio:
    3. Domain for 1zip:
  3. 2109217Bacillus subtilis [TaxId:1423] [102341] (1 PDB entry)
    contains a zinc-finger subdomain, residues 126-160
  4. 2109219Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [52559] (4 PDB entries)
    contains a rudiment "zinc-finger" subdomain, residue 131-168
    1. Domain for 1aky:
    2. Domains for 1dvr:
      1. 2109223Domain d1dvra1: 1dvr A:1-130,A:169-220 [31899]
        Other proteins in same PDB: d1dvra2, d1dvrb2
        complexed with atf; mutant
      2. 2109224Domain d1dvrb1: 1dvr B:1-130,B:169-220 [31900]
        Other proteins in same PDB: d1dvra2, d1dvrb2
        complexed with atf; mutant
    3. Domain for 2aky:
    4. Domain for 3aky:
  5. 2109225Cow (Bos taurus), mitochondrial izozyme-2 [TaxId:9913] [52558] (2 PDB entries)
    contains a rudiment "zinc-finger" subdomain, residue 147-176
    1. Domain for 1ak2:
    2. Domain for 2ak2:
  6. 2109228Cow (Bos taurus), mitochondrial izozyme-3 [TaxId:9913] [52557] (1 PDB entry)
    contains a rudiment "zinc-finger" subdomain, residue 125-161
  7. 2109231Escherichia coli [TaxId:1133853] [256826] (1 PDB entry)
  8. 2109234Escherichia coli [TaxId:562] [52560] (8 PDB entries)
    contains a rudiment "zinc-finger" subdomain, residue 122-156
    1. Domains for 1ake:
      1. 2109241Domain d1akea1: 1ake A:1-121,A:157-214 [31905]
        Other proteins in same PDB: d1akea2, d1akeb2
        complexed with ap5
      2. 2109242Domain d1akeb1: 1ake B:1-121,B:157-214 [31906]
        Other proteins in same PDB: d1akea2, d1akeb2
        complexed with ap5
    2. Domains for 1ank:
      1. 2109243Domain d1anka1: 1ank A:1-121,A:157-214 [31907]
        Other proteins in same PDB: d1anka2, d1ankb2
        complexed with amp, anp
      2. 2109244Domain d1ankb1: 1ank B:1-121,B:157-214 [31908]
        Other proteins in same PDB: d1anka2, d1ankb2
        complexed with amp, anp
    3. Domains for 1e4v:
      1. 2109237Domain d1e4va1: 1e4v A:1-121,A:157-214 [31903]
        Other proteins in same PDB: d1e4va2, d1e4vb2
        complexed with ap5; mutant
      2. 2109238Domain d1e4vb1: 1e4v B:1-121,B:157-214 [31904]
        Other proteins in same PDB: d1e4va2, d1e4vb2
        complexed with ap5; mutant
    4. Domains for 1e4y:
      1. 2109235Domain d1e4ya1: 1e4y A:1-121,A:157-214 [31901]
        Other proteins in same PDB: d1e4ya2, d1e4yb2
        complexed with ap5; mutant
      2. 2109236Domain d1e4yb1: 1e4y B:1-121,B:157-214 [31902]
        Other proteins in same PDB: d1e4ya2, d1e4yb2
        complexed with ap5; mutant
    5. Domains for 1eck:
      1. 2109247Domain d1ecka1: 1eck A:1-121,A:157-214 [302376]
        Other proteins in same PDB: d1ecka2, d1eckb2
        automated match to d1akea1
        complexed with adp, amp
      2. 2109248Domain d1eckb1: 1eck B:1-121,B:157-214 [302378]
        Other proteins in same PDB: d1ecka2, d1eckb2
        automated match to d1akea1
        complexed with adp, amp
    6. Domains for 2eck:
      1. 2109249Domain d2ecka1: 2eck A:1-121,A:157-214 [31911]
        Other proteins in same PDB: d2ecka2, d2eckb2
        complexed with adp, amp
      2. 2109250Domain d2eckb1: 2eck B:1-121,B:157-214 [31912]
        Other proteins in same PDB: d2ecka2, d2eckb2
        complexed with adp, amp
    7. Domains for 3hpq:
      1. 2109239Domain d3hpqa1: 3hpq A:1-121,A:157-214 [211182]
        Other proteins in same PDB: d3hpqa2, d3hpqb2
        automated match to d1akea1
        complexed with ap5
      2. 2109240Domain d3hpqb1: 3hpq B:1-121,B:157-214 [211184]
        Other proteins in same PDB: d3hpqa2, d3hpqb2
        automated match to d1akea1
        complexed with ap5
    8. Domains for 4ake:
      1. 2109245Domain d4akea1: 4ake A:1-121,A:157-214 [31909]
        Other proteins in same PDB: d4akea2, d4akeb2
      2. 2109246Domain d4akeb1: 4ake B:1-121,B:157-214 [31910]
        Other proteins in same PDB: d4akea2, d4akeb2
  9. 2109251Human (Homo sapiens), isoenzyme 6 [TaxId:9606] [117527] (1 PDB entry)
    Uniprot Q9Y3D8
  10. 2109253Maize (Zea mays) [TaxId:4577] [52561] (1 PDB entry)
  11. 2109256Methanococcus thermolithotrophicus [TaxId:2186] [89661] (1 PDB entry)
  12. 2109260Methanococcus voltae [TaxId:2188] [89660] (1 PDB entry)
  13. 2109264Mycobacterium tuberculosis [TaxId:1773] [102343] (2 PDB entries)
    contains no zinc finger-like insertion
    1. Domain for 1p4s:
    2. Domain for 2cdn:
  14. 2109267Pig (Sus scrofa) [TaxId:9823] [52555] (1 PDB entry)
  15. 2109269Sulfolobus acidocaldarius [TaxId:2285] [52556] (1 PDB entry)
  16. 2109276Thermus thermophilus [TaxId:274] [188607] (1 PDB entry)

More info for Protein Adenylate kinase from c.37.1.1: Nucleotide and nucleoside kinases

Timeline for Protein Adenylate kinase from c.37.1.1: Nucleotide and nucleoside kinases: