Lineage for Species: Pseudomonas putida

  1. Root: SCOP 1.63
  2. 235644Class c: Alpha and beta proteins (a/b) [51349] (117 folds)
  3. 242757Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 242758Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (4 families) (S)
    both pyridine (Pyr)- and pyrophosphate (PP)-binding modules have this fold
    conserved core consists of two Pyr and two PP-modules and binds two coenzyme molecules
  5. 242884Family c.36.1.3: Branched-chain alpha-keto acid dehydrogenase THDP-binding domains [52531] (3 proteins)
    parent family to TK and PFOR
    heterodimeric protein related to TK; alpha-subunit is the PP module and the N-terminal domain of beta-subunit is the Pyr module
  6. 242885Protein 2-oxoisovalerate dehydrogenase (E1B), PP and Pyr modules [52534] (1 species)
    chain A is alpha-subunit and chain B is beta-subunit
  7. 242886Species Pseudomonas putida [TaxId:303] [52535] (1 PDB entry)

PDB entry in Species: Pseudomonas putida:

More info for Species Pseudomonas putida [TaxId:303] from c.36.1.3 2-oxoisovalerate dehydrogenase (E1B), PP and Pyr modules

Timeline for Species Pseudomonas putida [TaxId:303] from c.36.1.3 2-oxoisovalerate dehydrogenase (E1B), PP and Pyr modules:

  • Species Pseudomonas putida [TaxId:303] from c.36.1.3 2-oxoisovalerate dehydrogenase (E1B), PP and Pyr modules first appeared (with stable ids) in SCOP 1.55, called Species Pseudomonas putida [TaxId:303] from c.36.1.3 2-oxoisovalerate dehydrogenase, E1B
  • Species Pseudomonas putida [TaxId:303] from c.36.1.3 2-oxoisovalerate dehydrogenase (E1B), PP and Pyr modules was called Species Pseudomonas putida [TaxId:303] from c.36.1.3 2-oxoisovalerate dehydrogenase, E1B in SCOP 1.61
  • Species Pseudomonas putida [TaxId:303] from c.36.1.3 2-oxoisovalerate dehydrogenase (E1B), PP and Pyr modules does not appear in SCOP 1.65