SCOPe 2.08: Protein: Tubulin beta-subunit

Lineage for Protein: Tubulin beta-subunit

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.32: Tubulin nucleotide-binding domain-like [52489] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
Superfamily c.32.1: Tubulin nucleotide-binding domain-like [52490] (2 families)
automatically mapped to Pfam PF00091
Family c.32.1.1: Tubulin, GTPase domain [52491] (4 proteins)
Protein Tubulin beta-subunit [52496] (2 species)

Species:

Cow (Bos taurus) [TaxId:9913] [63990] (6 PDB entries)
Uniprot P02550 ! Uniprot P02554
1. Domain for 1jff:
  - Domain d1jffb1: 1jff B:2-245 [62934]
    Other proteins in same PDB: d1jffa1, d1jffa2, d1jffb2
    complexed with gdp, gtp, mg, ta1, zn
2. Domains for 1sa0:
  1. Domain d1sa0b1: 1sa0 B:2-245 [98771]
    Other proteins in same PDB: d1sa0a1, d1sa0a2, d1sa0b2, d1sa0c1, d1sa0c2, d1sa0d2, d1sa0e1, d1sa0e2
    complexed with cn2, gdp, gtp, mg
  2. Domain d1sa0d1: 1sa0 D:2-245 [98775]
    Other proteins in same PDB: d1sa0a1, d1sa0a2, d1sa0b2, d1sa0c1, d1sa0c2, d1sa0d2, d1sa0e1, d1sa0e2
    complexed with cn2, gdp, gtp, mg
3. Domains for 1sa1:
  1. Domain d1sa1b1: 1sa1 B:2-245 [98780]
    Other proteins in same PDB: d1sa1a1, d1sa1a2, d1sa1b2, d1sa1c1, d1sa1c2, d1sa1d2, d1sa1e_
    complexed with gdp, gtp, mg, pod
  2. Domain d1sa1d1: 1sa1 D:2-245 [98784]
    Other proteins in same PDB: d1sa1a1, d1sa1a2, d1sa1b2, d1sa1c1, d1sa1c2, d1sa1d2, d1sa1e_
    complexed with gdp, gtp, mg, pod
4. Domains for 1tvk:
  1. Domain d1tvka1: 1tvk A:2-245 [107362]
    Other proteins in same PDB: d1tvka2, d1tvkb2
    complexed with ep, gdp, gtp
  2. Domain d1tvkb1: 1tvk B:2-245 [107364]
    Other proteins in same PDB: d1tvka2, d1tvkb2
    complexed with ep, gdp, gtp
5. Domains for 1z2b:
  1. Domain d1z2bb1: 1z2b B:2-245 [144727]
    Other proteins in same PDB: d1z2ba1, d1z2ba2, d1z2bb2, d1z2bc1, d1z2bc2, d1z2bd2, d1z2be1, d1z2be2
    complexed with cn2, gdp, gtp, mg, vlb
  2. Domain d1z2bd1: 1z2b D:2-245 [144731]
    Other proteins in same PDB: d1z2ba1, d1z2ba2, d1z2bb2, d1z2bc1, d1z2bc2, d1z2bd2, d1z2be1, d1z2be2
    automatically matched to 1Z2B B:2-245
    complexed with cn2, gdp, gtp, mg, vlb
6. Domains for 5fnv:
  1. Domain d5fnvb1: 5fnv B:2-243 [317449]
    Other proteins in same PDB: d5fnva1, d5fnva2, d5fnvb2, d5fnvc1, d5fnvc2, d5fnvd2, d5fnve_, d5fnvf1, d5fnvf2, d5fnvf3
    automated match to d1sa0b1
    complexed with acp, ca, gdp, gtp, mes, mg, x3h
  2. Domain d5fnvd1: 5fnv D:2-243 [317452]
    Other proteins in same PDB: d5fnva1, d5fnva2, d5fnvb2, d5fnvc1, d5fnvc2, d5fnvd2, d5fnve_, d5fnvf1, d5fnvf2, d5fnvf3
    automated match to d1sa0b1
    complexed with acp, ca, gdp, gtp, mes, mg, x3h
Pig (Sus scrofa) [TaxId:9823] [52497] (9 PDB entries)
1. Domain for 1tub:
  - Domain d1tubb1: 1tub B:1-245 [31752]
    Other proteins in same PDB: d1tuba1, d1tuba2, d1tubb2
    complexed with gdp, gtp, txl
2. Domain for 2hxf:
  - Domain d2hxfb1: 2hxf B:2-246 [136840]
    Other proteins in same PDB: d2hxfa1, d2hxfa2, d2hxfb2, d2hxfc1
    automatically matched to d1tvkb1
    complexed with anp, gdp, gtp, mg, ta1
3. Domain for 2hxh:
  - Domain d2hxhb1: 2hxh B:2-246 [136851]
    Other proteins in same PDB: d2hxha1, d2hxha2, d2hxhb2
    automatically matched to d1tvkb1
    complexed with adp, gdp, gtp, mg, ta1
4. Domains for 4zhq:
  1. Domain d4zhqb1: 4zhq B:1-245 [320230]
    Other proteins in same PDB: d4zhqa1, d4zhqa2, d4zhqb2, d4zhqc1, d4zhqc2, d4zhqd2, d4zhqe_, d4zhqf1, d4zhqf2, d4zhqf3
    automated match to d1sa0b1
    complexed with 4q5, acp, ca, gdp, gol, gtp, mes, mg
  2. Domain d4zhqd1: 4zhq D:1-245 [320179]
    Other proteins in same PDB: d4zhqa1, d4zhqa2, d4zhqb2, d4zhqc1, d4zhqc2, d4zhqd2, d4zhqe_, d4zhqf1, d4zhqf2, d4zhqf3
    automated match to d1sa0b1
    complexed with 4q5, acp, ca, gdp, gol, gtp, mes, mg
5. Domains for 4zi7:
  1. Domain d4zi7b1: 4zi7 B:1-245 [320163]
    Other proteins in same PDB: d4zi7a1, d4zi7a2, d4zi7b2, d4zi7c1, d4zi7c2, d4zi7d2, d4zi7e_, d4zi7f1, d4zi7f2, d4zi7f3
    automated match to d1sa0b1
    complexed with 4sl, acp, ca, gdp, gol, gtp, mes, mg
  2. Domain d4zi7d1: 4zi7 D:1-245 [320168]
    Other proteins in same PDB: d4zi7a1, d4zi7a2, d4zi7b2, d4zi7c1, d4zi7c2, d4zi7d2, d4zi7e_, d4zi7f1, d4zi7f2, d4zi7f3
    automated match to d1sa0b1
    complexed with 4sl, acp, ca, gdp, gol, gtp, mes, mg
6. Domains for 4zol:
  1. Domain d4zolb1: 4zol B:1-245 [320195]
    Other proteins in same PDB: d4zola1, d4zola2, d4zolb2, d4zolc1, d4zolc2, d4zold2, d4zole_, d4zolf1, d4zolf2, d4zolf3
    automated match to d1sa0b1
    complexed with 55q, acp, ca, gdp, gol, gtp, mes, mg
  2. Domain d4zold1: 4zol D:1-245 [320222]
    Other proteins in same PDB: d4zola1, d4zola2, d4zolb2, d4zolc1, d4zolc2, d4zold2, d4zole_, d4zolf1, d4zolf2, d4zolf3
    automated match to d1sa0b1
    complexed with 55q, acp, ca, gdp, gol, gtp, mes, mg
7. Domains for 5bmv:
  1. Domain d5bmvb1: 5bmv B:1-245 [319660]
    Other proteins in same PDB: d5bmva1, d5bmva2, d5bmvb2, d5bmvc1, d5bmvc2, d5bmvd2, d5bmve_, d5bmvf1, d5bmvf2, d5bmvf3
    automated match to d1sa0b1
    complexed with acp, ca, gdp, gol, gtp, mes, mg, vlb
  2. Domain d5bmvd1: 5bmv D:1-245 [319507]
    Other proteins in same PDB: d5bmva1, d5bmva2, d5bmvb2, d5bmvc1, d5bmvc2, d5bmvd2, d5bmve_, d5bmvf1, d5bmvf2, d5bmvf3
    automated match to d1sa0b1
    complexed with acp, ca, gdp, gol, gtp, mes, mg, vlb
8. Domains for 5jqg:
  1. Domain d5jqgb1: 5jqg B:2-243 [317590]
    Other proteins in same PDB: d5jqga1, d5jqga2, d5jqgb2, d5jqgc1, d5jqgc2, d5jqgd2, d5jqge_, d5jqgf1, d5jqgf2, d5jqgf3
    automated match to d1sa0b1
    complexed with acp, ca, cl, gdp, gtp, mes, mg
  2. Domain d5jqgd1: 5jqg D:2-243 [317583]
    Other proteins in same PDB: d5jqga1, d5jqga2, d5jqgb2, d5jqgc1, d5jqgc2, d5jqgd2, d5jqge_, d5jqgf1, d5jqgf2, d5jqgf3
    automated match to d1sa0b1
    complexed with acp, ca, cl, gdp, gtp, mes, mg
9. Domains for 6y4n:
  1. Domain d6y4nb1: 6y4n B:1-243 [402800]
    Other proteins in same PDB: d6y4na1, d6y4na2, d6y4nb2, d6y4nc1, d6y4nc2, d6y4nd2, d6y4ne_, d6y4nf1, d6y4nf2, d6y4nf3
    automated match to d1sa0b1
    complexed with acp, ca, gdp, gtp, mes, mg, o9b, o9k, o9n, p6s, peg, pge, val
  2. Domain d6y4nd1: 6y4n D:1-243 [402814]
    Other proteins in same PDB: d6y4na1, d6y4na2, d6y4nb2, d6y4nc1, d6y4nc2, d6y4nd2, d6y4ne_, d6y4nf1, d6y4nf2, d6y4nf3
    automated match to d1sa0b1
    complexed with acp, ca, gdp, gtp, mes, mg, o9b, o9k, o9n, p6s, peg, pge, val

More info for Protein Tubulin beta-subunit from c.32.1.1: Tubulin, GTPase domain

Timeline for Protein Tubulin beta-subunit from c.32.1.1: Tubulin, GTPase domain:

Protein Tubulin beta-subunit from c.32.1.1: Tubulin, GTPase domain first appeared (with stable ids) in SCOP 1.55
Protein Tubulin beta-subunit from c.32.1.1: Tubulin, GTPase domain appears in SCOPe 2.07