SCOPe 2.08: Protein: Transhydrogenase domain III (dIII)

Lineage for Protein: Transhydrogenase domain III (dIII)

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.31: DHS-like NAD/FAD-binding domain [52466] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456; Rossmann-like
Superfamily c.31.1: DHS-like NAD/FAD-binding domain [52467] (7 families)
binds cofactor molecules in the opposite direction than classical Rossmann fold
Family c.31.1.4: Transhydrogenase domain III (dIII) [52484] (2 proteins)
binds NADP, shares with the pyruvate oxidase FAD-binding domain a common ADP-binding mode
automatically mapped to Pfam PF02233
Protein Transhydrogenase domain III (dIII) [52485] (3 species)

Species:

Cow (Bos taurus) [TaxId:9913] [52487] (1 PDB entry)
- Domain for 1d4o:
  - Domain d1d4oa_: 1d4o A: [31748]
    complexed with nap
Human (Homo sapiens) [TaxId:9606] [52486] (3 PDB entries)
1. Domains for 1djl:
  1. Domain d1djla_: 1djl A: [31746]
    complexed with gol, nap, so4
  2. Domain d1djlb_: 1djl B: [31747]
    complexed with gol, nap, so4
2. Domains for 1pt9:
  1. Domain d1pt9a_: 1pt9 A: [95097]
    complexed with gol, so4, tap
  2. Domain d1pt9b_: 1pt9 B: [95098]
    complexed with gol, so4, tap
3. Domains for 1u31:
  1. Domain d1u31a_: 1u31 A: [119491]
    automated match to d1djla_
    complexed with gol, ndp, so4
  2. Domain d1u31b_: 1u31 B: [119492]
    automated match to d1djla_
    complexed with gol, ndp, so4

Rhodospirillum rubrum [TaxId:1085] [52488] (15 PDB entries)

Domain for 1e3t:
- Domain d1e3ta_: 1e3t A: [31749]
  complexed with nap
Domain for 1hzz:
- Domain d1hzzc_: 1hzz C: [61474]
  Other proteins in same PDB: d1hzza1, d1hzza2, d1hzzb1, d1hzzb2
  complexed with dI component
  complexed with nad, nap
Domain for 1nm5:
- Domain d1nm5c_: 1nm5 C: [91972]
  Other proteins in same PDB: d1nm5a1, d1nm5a2, d1nm5b1, d1nm5b2
  complexed with dI component
  complexed with gol, nad, nap
Domains for 1pno:
1. Domain d1pnoa1: 1pno A:294-464 [94953]
  Other proteins in same PDB: d1pnoa2, d1pnob2
  complexed with nap
2. Domain d1pnob1: 1pno B:294-464 [94954]
  Other proteins in same PDB: d1pnoa2, d1pnob2
  complexed with nap
Domains for 1pnq:
1. Domain d1pnqa1: 1pnq A:294-464 [94955]
  Other proteins in same PDB: d1pnqa2, d1pnqb2
  complexed with ndp
2. Domain d1pnqb1: 1pnq B:294-464 [94956]
  Other proteins in same PDB: d1pnqa2, d1pnqb2
  complexed with ndp
Domain for 1ptj:
- Domain d1ptjc_: 1ptj C: [95103]
  Other proteins in same PDB: d1ptja1, d1ptja2, d1ptjb1, d1ptjb2
  complexed with dI component
  complexed with gol, nap, snd
Domain for 1u28:
- Domain d1u28c_: 1u28 C: [119472]
  Other proteins in same PDB: d1u28a1, d1u28a2, d1u28b1, d1u28b2
  automated match to d1nm5c_
  complexed with gol, nad, nap
Domain for 1u2d:
- Domain d1u2dc_: 1u2d C: [119479]
  Other proteins in same PDB: d1u2da1, d1u2da2, d1u2db1, d1u2db2
  automated match to d1e3ta_
  complexed with gol, nad, ndp
Domain for 1u2g:
- Domain d1u2gc_: 1u2g C: [119484]
  Other proteins in same PDB: d1u2ga1, d1u2ga2, d1u2gb1, d1u2gb2
  automated match to d1nm5c_
  complexed with apr, gol, ndp

Domains for 1xlt:

Domain d1xltc2: 1xlt C:294-464 [122126]
Other proteins in same PDB: d1xlta1, d1xlta2, d1xltb1, d1xltb2, d1xltc3, d1xltd1, d1xltd2, d1xlte1, d1xlte2, d1xltf3, d1xltg1, d1xltg2, d1xlth1, d1xlth2, d1xlti3
automated match to d1pnob_
complexed with na, nad, ndp

Domain d1xltf2: 1xlt F:294-464 [122131]
Other proteins in same PDB: d1xlta1, d1xlta2, d1xltb1, d1xltb2, d1xltc3, d1xltd1, d1xltd2, d1xlte1, d1xlte2, d1xltf3, d1xltg1, d1xltg2, d1xlth1, d1xlth2, d1xlti3
automated match to d1pnob_
complexed with na, nad, ndp

Domain d1xlti2: 1xlt I:294-464 [122136]
Other proteins in same PDB: d1xlta1, d1xlta2, d1xltb1, d1xltb2, d1xltc3, d1xltd1, d1xltd2, d1xlte1, d1xlte2, d1xltf3, d1xltg1, d1xltg2, d1xlth1, d1xlth2, d1xlti3
automated match to d1pnob_
complexed with na, nad, ndp

Domain for 2fr8:
- Domain d2fr8c_: 2fr8 C: [133977]
  Other proteins in same PDB: d2fr8a1, d2fr8a2, d2fr8b1, d2fr8b2
  automated match to d1nm5c_
  complexed with nad, nap
Domain for 2frd:
- Domain d2frdc1: 2frd C:33-203 [133984]
  Other proteins in same PDB: d2frda1, d2frda2, d2frdb1, d2frdb2
  automatically matched to d1pnoa_
  complexed with nai, ndp
Domain for 2fsv:
- Domain d2fsvc1: 2fsv C:30-203 [134041]
  Other proteins in same PDB: d2fsva1, d2fsva2, d2fsvb1, d2fsvb2
  complexed with gol, nad, nap
Domain for 2oo5:
- Domain d2oo5c_: 2oo5 C: [139166]
  Other proteins in same PDB: d2oo5a1, d2oo5a2, d2oo5b1, d2oo5b2
  automated match to d1hzzc_
  complexed with nap, so4, txd
Domain for 2oor:
- Domain d2oorc_: 2oor C: [139175]
  Other proteins in same PDB: d2oora1, d2oora2, d2oorb1, d2oorb2
  automated match to d1hzzc_
  complexed with gol, nad, txp

More info for Protein Transhydrogenase domain III (dIII) from c.31.1.4: Transhydrogenase domain III (dIII)

Timeline for Protein Transhydrogenase domain III (dIII) from c.31.1.4: Transhydrogenase domain III (dIII):

Protein Transhydrogenase domain III (dIII) from c.31.1.4: Transhydrogenase domain III (dIII) first appeared (with stable ids) in SCOP 1.55
Protein Transhydrogenase domain III (dIII) from c.31.1.4: Transhydrogenase domain III (dIII) appears in SCOPe 2.07