SCOPe 2.05: Family c.30.1.2: D-Alanine ligase N-terminal domain

Lineage for Family c.30.1.2: D-Alanine ligase N-terminal domain

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.30: PreATP-grasp domain [52439] (1 superfamily)
   3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
   possible rudiment form of Rossmann-fold domain

4. Superfamily c.30.1: PreATP-grasp domain [52440] (9 families)
   precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function

5. Family c.30.1.2: D-Alanine ligase N-terminal domain [52452] (2 proteins)

Proteins:

1. D-Ala-D-Ala ligase, N-domain [52453] (3 species)

   1. Species Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [256401] (1 PDB entry)

   2. Species Bacillus anthracis [TaxId:198094] [256400] (1 PDB entry)

   3. Species Escherichia coli, gene ddlB [TaxId:562] [52454] (3 PDB entries)

2. D-alanine:D-lactate ligase VanA, N-domain [52455] (2 species)

   1. Species Enterococcus faecium [TaxId:1352] [63983] (1 PDB entry)

   2. Species Leuconostoc mesenteroides, Ddl2 [TaxId:1245] [52456] (1 PDB entry)

More info for Family c.30.1.2: D-Alanine ligase N-terminal domain

Timeline for Family c.30.1.2: D-Alanine ligase N-terminal domain:

• Family c.30.1.2: D-Alanine ligase N-terminal domain first appeared (with stable ids) in SCOP 1.55
  
• Family c.30.1.2: D-Alanine ligase N-terminal domain appears in SCOPe 2.04
  
• Family c.30.1.2: D-Alanine ligase N-terminal domain appears in SCOPe 2.06
  
• Family c.30.1.2: D-Alanine ligase N-terminal domain appears in the current release, SCOPe 2.08