Structural Classification of Proteins and ASTRAL release 1.75B (January 2013)
Search SCOP (example):

Lineage for Family c.26.2.1: N-type ATP pyrophosphatases

  1. Root: SCOP 1.75B
  2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. Superfamily c.26.2: Adenine nucleotide alpha hydrolases-like [52402] (7 families) (S)
    share similar mode of ligand (Adenosine group) binding
    can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group
  5. Family c.26.2.1: N-type ATP pyrophosphatases [52403] (9 protein domains)

Protein Domains:

  1. Argininosuccinate synthetase, N-terminal domain [69458] (3 species)
    1. Species Escherichia coli [TaxId:562] [69459] (4 PDB entries)
    2. Species Thermotoga maritima [TaxId:2336] [110493] (1 PDB entry)
      Uniprot Q9X2A1
    3. Species Thermus thermophilus [TaxId:274] [75167] (7 PDB entries)
  2. Asparagine synthetase B, C-terminal domain [52408] (1 species)
  3. beta-Lactam synthetase [69456] (2 species)
    Asparagine synthetase B homologue
    1. Species Pectobacterium carotovorum [TaxId:554] [102263] (2 PDB entries)
      carbapenam synthetase CarA
    2. Species Streptomyces clavuligerus [TaxId:1901] [69457] (5 PDB entries)
  4. GMP synthetase, central domain [52404] (1 species)
  5. Hypothetical protein PH1257 [142085] (1 species)
    probable orthologue of PF0828
  6. NH3-dependent NAD+-synthetase [52406] (4 species)
    1. Species Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [188002] (3 PDB entries)
    2. Species Bacillus subtilis [TaxId:1423] [52407] (7 PDB entries)
    3. Species Escherichia coli [TaxId:562] [142083] (1 PDB entry)
      Uniprot P18843 2-275
    4. Species Helicobacter pylori [TaxId:210] [142084] (1 PDB entry)
      Uniprot O25096 3-257
  7. Putative N-type ATP pyrophosphatase PF0828 [102264] (1 species)
  8. Queuosine biosynthesis protein QueC [159496] (1 species)
  9. automated matches [190257] (3 species)
    not a true protein
    1. Species Helicobacter pylori [TaxId:210] [188123] (2 PDB entries)
    2. Species Pyrococcus horikoshii [TaxId:53953] [187044] (1 PDB entry)
    3. Species Salmonella typhimurium [TaxId:90371] [188917] (1 PDB entry)

More info for Family c.26.2.1: N-type ATP pyrophosphatases

Timeline for Family c.26.2.1: N-type ATP pyrophosphatases:

Family c.26.2.1: N-type ATP pyrophosphatases appears in SCOP 1.75A


SCOP Copyright © 1994-2013 The SCOP and Astral authors
scop@mrc-lmb.cam.ac.uk and astral@compbio.berkeley.edu