SCOPe 2.08: Family c.23.5.1: Flavodoxin-related

Lineage for Family c.23.5.1: Flavodoxin-related

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
   3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345

4. Superfamily c.23.5: Flavoproteins [52218] (9 families)

5. Family c.23.5.1: Flavodoxin-related [52219] (6 proteins)
   binds FMN

Proteins:

1. Flavodoxin [52220] (11 species)

   1. Species Anabaena, pcc 7119 and 7120 [TaxId:1163] [52223] (8 PDB entries)

   2. Species Azotobacter vinelandii [TaxId:354] [142046] (1 PDB entry)
      Uniprot P00324 1-179

   3. Species Chondrus crispus [TaxId:2769] [52221] (1 PDB entry)

   4. Species Clostridium beijerinckii [TaxId:1520] [52226] (16 PDB entries)

   5. Species Desulfovibrio vulgaris [TaxId:881] [52222] (25 PDB entries)
      Uniprot P00323

   6. Species Escherichia coli [TaxId:1403831] [272862] (1 PDB entry)

   7. Species Escherichia coli [TaxId:562] [52224] (2 PDB entries)

   8. Species Helicobacter pylori [TaxId:210] [69446] (1 PDB entry)

   9. Species Megasphaera elsdenii [TaxId:907] [142045] (1 PDB entry)
      Uniprot P00321 1-137

   10. Species Nostoc sp. [TaxId:1168] [419775] (1 PDB entry)

   11. Species Synechococcus elongatus PCC 7942 [TaxId:1140] [52225] (10 PDB entries)

2. FMN-binding domain of the cytochrome P450bm-3 [52227] (1 species)

   • Species Bacillus megaterium [TaxId:1404] [52228] (1 PDB entry)

3. Nitric oxide reductase C-terminal domain [142047] (2 species)

   1. Species Giardia intestinalis [TaxId:5741] [231193] (1 PDB entry)

   2. Species Moorella thermoacetica [TaxId:1525] [142048] (3 PDB entries)
      Uniprot Q9FDN7 251-399

4. ROO-like flavoprotein TM0755, C-terminal domain [110466] (1 species)

   • Species Thermotoga maritima [TaxId:2336] [110467] (1 PDB entry)
     Uniprot Q9WZL4

5. Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain [52229] (1 species)

   • Species Desulfovibrio gigas [TaxId:879] [52230] (1 PDB entry)

6. automated matches [190443] (6 species)
   not a true protein

   1. Species Anabaena sp. [TaxId:1168] [188238] (5 PDB entries)

   2. Species Azotobacter vinelandii [TaxId:354] [337168] (1 PDB entry)

   3. Species Desulfovibrio gigas [TaxId:879] [194059] (1 PDB entry)

   4. Species Desulfovibrio vulgaris [TaxId:882] [348888] (4 PDB entries)

   5. Species Helicobacter pylori [TaxId:210] [187348] (2 PDB entries)

   6. Species Rhodobacter capsulatus [TaxId:1061] [189322] (1 PDB entry)

More info for Family c.23.5.1: Flavodoxin-related

Timeline for Family c.23.5.1: Flavodoxin-related:

• Family c.23.5.1: Flavodoxin-related first appeared (with stable ids) in SCOP 1.55
  
• Family c.23.5.1: Flavodoxin-related appears in SCOPe 2.07