SCOPe 2.08: Protein: Uracil-DNA glycosylase

Lineage for Protein: Uracil-DNA glycosylase

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.18: Uracil-DNA glycosylase-like [52140] (1 superfamily)
3 layers, a/b/a; core: parallel beta-sheet of 4 strands, order 2134
Superfamily c.18.1: Uracil-DNA glycosylase-like [52141] (5 families)
Family c.18.1.1: Uracil-DNA glycosylase [52142] (2 proteins)
Protein Uracil-DNA glycosylase [52143] (5 species)

Species:

Atlantic cod (Gadus morhua) [TaxId:8049] [102212] (2 PDB entries)

Domains for 1okb:
1. Domain d1okba_: 1okb A: [93246]
  complexed with cl, gol
2. Domain d1okbb_: 1okb B: [93247]
  complexed with cl, gol

Domains for 4lyl:

Domain d4lyla1: 4lyl A:85-304 [258922]
Other proteins in same PDB: d4lyla2, d4lylb_, d4lylc2, d4lyld_, d4lyle2, d4lylf_, d4lylg2, d4lylh_, d4lyli2, d4lylj_, d4lylk2, d4lyll_, d4lylm2, d4lyln_, d4lylo2, d4lylp_
automated match to d1okba_
protein/DNA complex

Domain d4lylc1: 4lyl C:85-304 [258926]
Other proteins in same PDB: d4lyla2, d4lylb_, d4lylc2, d4lyld_, d4lyle2, d4lylf_, d4lylg2, d4lylh_, d4lyli2, d4lylj_, d4lylk2, d4lyll_, d4lylm2, d4lyln_, d4lylo2, d4lylp_
automated match to d1okba_
protein/DNA complex

Domain d4lyle1: 4lyl E:85-304 [258925]
Other proteins in same PDB: d4lyla2, d4lylb_, d4lylc2, d4lyld_, d4lyle2, d4lylf_, d4lylg2, d4lylh_, d4lyli2, d4lylj_, d4lylk2, d4lyll_, d4lylm2, d4lyln_, d4lylo2, d4lylp_
automated match to d1okba_
protein/DNA complex

Domain d4lylg1: 4lyl G:85-304 [258931]
Other proteins in same PDB: d4lyla2, d4lylb_, d4lylc2, d4lyld_, d4lyle2, d4lylf_, d4lylg2, d4lylh_, d4lyli2, d4lylj_, d4lylk2, d4lyll_, d4lylm2, d4lyln_, d4lylo2, d4lylp_
automated match to d1okba_
protein/DNA complex

Domain d4lyli1: 4lyl I:85-304 [258933]
Other proteins in same PDB: d4lyla2, d4lylb_, d4lylc2, d4lyld_, d4lyle2, d4lylf_, d4lylg2, d4lylh_, d4lyli2, d4lylj_, d4lylk2, d4lyll_, d4lylm2, d4lyln_, d4lylo2, d4lylp_
automated match to d1okba_
protein/DNA complex

Domain d4lylk1: 4lyl K:85-304 [258930]
Other proteins in same PDB: d4lyla2, d4lylb_, d4lylc2, d4lyld_, d4lyle2, d4lylf_, d4lylg2, d4lylh_, d4lyli2, d4lylj_, d4lylk2, d4lyll_, d4lylm2, d4lyln_, d4lylo2, d4lylp_
automated match to d1okba_
protein/DNA complex

Domain d4lylm1: 4lyl M:85-304 [258932]
Other proteins in same PDB: d4lyla2, d4lylb_, d4lylc2, d4lyld_, d4lyle2, d4lylf_, d4lylg2, d4lylh_, d4lyli2, d4lylj_, d4lylk2, d4lyll_, d4lylm2, d4lyln_, d4lylo2, d4lylp_
automated match to d1okba_
protein/DNA complex

Domain d4lylo1: 4lyl O:85-304 [258935]
Other proteins in same PDB: d4lyla2, d4lylb_, d4lylc2, d4lyld_, d4lyle2, d4lylf_, d4lylg2, d4lylh_, d4lyli2, d4lylj_, d4lylk2, d4lyll_, d4lylm2, d4lyln_, d4lylo2, d4lylp_
automated match to d1okba_
protein/DNA complex

Epstein-Barr virus [TaxId:10376] [159461] (1 PDB entry)
Uniprot Q777D9 26-255
- Domains for 2j8x:
  1. Domain d2j8xa1: 2j8x A:26-255 [145675]
    Other proteins in same PDB: d2j8xb_, d2j8xd_
    protein/DNA complex; complexed with ure
  2. Domain d2j8xc_: 2j8x C: [145676]
    Other proteins in same PDB: d2j8xb_, d2j8xd_
    automated match to d2j8xa1
    protein/DNA complex; complexed with ure
Escherichia coli [TaxId:562] [52146] (12 PDB entries)
1. Domain for 1eug:
  - Domain d1euga_: 1eug A: [31021]
    CASP3
    protein/DNA complex
2. Domains for 1eui:
  1. Domain d1euia_: 1eui A: [31028]
    Other proteins in same PDB: d1euic_, d1euid_
    protein/DNA complex
  2. Domain d1euib_: 1eui B: [31029]
    Other proteins in same PDB: d1euic_, d1euid_
    protein/DNA complex
3. Domain for 1flz:
  - Domain d1flza_: 1flz A: [31027]
    complexed with ura
4. Domains for 1lqg:
  1. Domain d1lqga_: 1lqg A: [78131]
    Other proteins in same PDB: d1lqgc_, d1lqgd_
    protein/DNA complex
  2. Domain d1lqgb_: 1lqg B: [78132]
    Other proteins in same PDB: d1lqgc_, d1lqgd_
    protein/DNA complex
5. Domains for 1lqj:
  1. Domain d1lqja1: 1lqj A:2-228 [78135]
    Other proteins in same PDB: d1lqja2, d1lqjb2, d1lqjc2
  2. Domain d1lqjb1: 1lqj B:2-226 [78136]
    Other proteins in same PDB: d1lqja2, d1lqjb2, d1lqjc2
  3. Domain d1lqjc1: 1lqj C:2-229 [78137]
    Other proteins in same PDB: d1lqja2, d1lqjb2, d1lqjc2
  4. Domain d1lqjd_: 1lqj D: [78138]
    Other proteins in same PDB: d1lqja2, d1lqjb2, d1lqjc2
6. Domains for 1lqm:
  1. Domain d1lqma_: 1lqm A: [78141]
    Other proteins in same PDB: d1lqmb_, d1lqmd_, d1lqmf_, d1lqmh_
    protein/DNA complex
  2. Domain d1lqmc_: 1lqm C: [78143]
    Other proteins in same PDB: d1lqmb_, d1lqmd_, d1lqmf_, d1lqmh_
    protein/DNA complex
  3. Domain d1lqme_: 1lqm E: [78145]
    Other proteins in same PDB: d1lqmb_, d1lqmd_, d1lqmf_, d1lqmh_
    protein/DNA complex
  4. Domain d1lqmg_: 1lqm G: [78147]
    Other proteins in same PDB: d1lqmb_, d1lqmd_, d1lqmf_, d1lqmh_
    protein/DNA complex
7. Domains for 1uug:
  1. Domain d1uuga_: 1uug A: [31023]
    Other proteins in same PDB: d1uugb_, d1uugd_
    protein/DNA complex
  2. Domain d1uugc_: 1uug C: [31024]
    Other proteins in same PDB: d1uugb_, d1uugd_
    protein/DNA complex
8. Domain for 2eug:
  - Domain d2euga_: 2eug A: [31020]
    protein/DNA complex; complexed with ura
9. Domains for 2uug:
  1. Domain d2uuga_: 2uug A: [31025]
    Other proteins in same PDB: d2uugc_, d2uugd_
    protein/DNA complex; mutant
  2. Domain d2uugb_: 2uug B: [31026]
    Other proteins in same PDB: d2uugc_, d2uugd_
    protein/DNA complex; mutant
10. Domain for 3eug:
  - Domain d3euga_: 3eug A: [31018]
    protein/DNA complex; complexed with gol
11. Domain for 4eug:
  - Domain d4euga_: 4eug A: [31019]
    protein/DNA complex; mutant
12. Domain for 5eug:
  - Domain d5euga_: 5eug A: [31022]
    protein/DNA complex; complexed with ura; mutant
Herpes simplex virus type 1 [TaxId:10298] [52145] (4 PDB entries)
1. Domain for 1lau:
  - Domain d1laue_: 1lau E: [31014]
    protein/DNA complex
2. Domain for 1udg:
  - Domain d1udga_: 1udg A: [31016]
    complexed with so4
3. Domain for 1udh:
  - Domain d1udha_: 1udh A: [31015]
    complexed with so4, ura
4. Domain for 1udi:
  - Domain d1udie_: 1udi E: [31017]
    Other proteins in same PDB: d1udii_
    protein/DNA complex
Human (Homo sapiens) [TaxId:9606] [52144] (16 PDB entries)
1. Domain for 1akz:
  - Domain d1akza1: 1akz A:85-304 [31007]
    Other proteins in same PDB: d1akza2
2. Domain for 1emh:
  - Domain d1emha_: 1emh A: [31008]
    protein/DNA complex
3. Domain for 1emj:
  - Domain d1emja_: 1emj A: [31011]
    protein/DNA complex; complexed with ura
4. Domain for 1q3f:
  - Domain d1q3fa1: 1q3f A:85-304 [95671]
    Other proteins in same PDB: d1q3fa2
    protein/DNA complex; complexed with po4, ura
5. Domain for 1ssp:
  - Domain d1sspe1: 1ssp E:85-304 [31009]
    Other proteins in same PDB: d1sspe2
    protein/DNA complex; complexed with ura
6. Domain for 1ugh:
  - Domain d1ughe1: 1ugh E:85-304 [31010]
    Other proteins in same PDB: d1ughe2, d1ughi_
    protein/DNA complex
7. Domain for 1yuo:
  - Domain d1yuoa_: 1yuo A: [162305]
    automated match to d1akza_
8. Domain for 2hxm:
  - Domain d2hxma2: 2hxm A:85-304 [136857]
    Other proteins in same PDB: d2hxma3
    automated match to d1akz__
    protein/DNA complex; complexed with 302
9. Domain for 2oxm:
  - Domain d2oxma2: 2oxm A:85-304 [149059]
    Other proteins in same PDB: d2oxma3
    automated match to d1akza_
    protein/DNA complex
10. Domain for 2oyt:
  - Domain d2oyta2: 2oyt A:85-304 [149079]
    Other proteins in same PDB: d2oyta3
    automated match to d1akza_
    protein/DNA complex
11. Domain for 2ssp:
  - Domain d2sspe_: 2ssp E: [31012]
    protein/DNA complex
12. Domain for 3fck:
  - Domain d3fckb1: 3fck B:85-304 [175687]
    Other proteins in same PDB: d3fckb2
    automated match to d1akza_
    protein/DNA complex; complexed with fck
13. Domain for 3tkb:
  - Domain d3tkba1: 3tkb A:85-304 [185864]
    Other proteins in same PDB: d3tkba2
    automated match to d1akza_
    complexed with imd; mutant
14. Domain for 4skn:
  - Domain d4skne1: 4skn E:85-304 [31013]
    Other proteins in same PDB: d4skne2
    protein/DNA complex; complexed with ura
15. Domains for 5ayr:
  1. Domain d5ayra1: 5ayr A:85-304 [318197]
    Other proteins in same PDB: d5ayra2, d5ayra3, d5ayrc2, d5ayrc3
    automated match to d1emha_
    protein/DNA complex; complexed with mg
  2. Domain d5ayrc1: 5ayr C:85-304 [318064]
    Other proteins in same PDB: d5ayra2, d5ayra3, d5ayrc2, d5ayrc3
    automated match to d1emha_
    protein/DNA complex; complexed with mg
16. Domain for 6vba:
  - Domain d6vbaa1: 6vba A:85-304 [400694]
    Other proteins in same PDB: d6vbaa2
    automated match to d1emha_
    complexed with qu4

More info for Protein Uracil-DNA glycosylase from c.18.1.1: Uracil-DNA glycosylase

Timeline for Protein Uracil-DNA glycosylase from c.18.1.1: Uracil-DNA glycosylase:

Protein Uracil-DNA glycosylase from c.18.1.1: Uracil-DNA glycosylase first appeared (with stable ids) in SCOP 1.55
Protein Uracil-DNA glycosylase from c.18.1.1: Uracil-DNA glycosylase appears in SCOPe 2.07