SCOPe 2.08: Family c.14.1.3: Crotonase-like

Lineage for Family c.14.1.3: Crotonase-like

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.14: ClpP/crotonase [52095] (1 superfamily)
   core: 4 turns of (beta-beta-alpha)n superhelix

4. Superfamily c.14.1: ClpP/crotonase [52096] (5 families)

5. Family c.14.1.3: Crotonase-like [52103] (14 proteins)

Proteins:

1. 4-Chlorobenzoyl-CoA dehalogenase [52104] (1 species)

   • Species Pseudomonas sp., strain CBS-3 [TaxId:306] [52105] (2 PDB entries)

2. 6-oxo camphor hydrolase [82331] (1 species)

   • Species Rhodococcus erythropolis [TaxId:1833] [82332] (2 PDB entries)
     Uniprot Q93TU6

3. AUH protein [69440] (1 species)
   an RNA-binding homologue of enoyl-CoA hydratase

   • Species Human (Homo sapiens) [TaxId:9606] [69441] (3 PDB entries)

4. Carbapenem biosynthes protein CarB [142004] (1 species)

   • Species Pectobacterium carotovorum [TaxId:554] [142005] (1 PDB entry)
     Uniprot Q9XB60 1-230

5. Chromodomain protein CDY1, C-terminal domain [142008] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [142009] (1 PDB entry)
     Uniprot Q9Y6F8 282-532

6. Chromodomain protein CDY2A [142002] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [142003] (1 PDB entry)
     Uniprot Q9Y6F7 284-541

7. Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) [52108] (5 species)

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [63954] (4 PDB entries)

   2. Species Human (Homo sapiens) [TaxId:9606] [186760] (1 PDB entry)

   3. Species Human (Homo sapiens), mitochondrial [TaxId:9606] [141999] (1 PDB entry)
      Uniprot P42126 44-292

   4. Species Norway rat (Rattus norvegicus) [TaxId:10116] [52109] (1 PDB entry)

   5. Species Norway rat (Rattus norvegicus), mitochondrial [TaxId:10116] [117465] (1 PDB entry)
      Uniprot P23965

8. Enoyl-CoA hydratase (crotonase) [52106] (2 species)

   1. Species Norway rat (Rattus norvegicus) [TaxId:10116] [52107] (4 PDB entries)

   2. Species Thermus thermophilus [TaxId:274] [102207] (1 PDB entry)

9. Fatty oxidation complex alpha subunit, N-terminal domain [110450] (1 species)

   • Species Pseudomonas fragi [TaxId:296] [110451] (4 PDB entries)
     Uniprot P28793

10. Methylmalonyl CoA decarboxylase [52110] (2 species)

    1. Species Escherichia coli [TaxId:562] [52111] (2 PDB entries)

    2. Species Escherichia coli [TaxId:83333] [367511] (6 PDB entries)

11. Naphthoate synthase MenB [102208] (1 species)

    • Species Mycobacterium tuberculosis [TaxId:1773] [102209] (4 PDB entries)
      Uniprot O06414 18-285

12. Peroxisomal 3,2-trans-enoyl-CoA isomerase [142006] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [142007] (1 PDB entry)
      Uniprot O75521 103-347

13. Probable enoyl-CoA hydratase TTHA0218 [142000] (1 species)

    • Species Thermus thermophilus [TaxId:274] [142001] (1 PDB entry)
      Uniprot Q5SLS5 2-264

14. automated matches [190669] (6 species)
    not a true protein

    1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [279382] (3 PDB entries)

    2. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [279389] (2 PDB entries)

    3. Species Human (Homo sapiens) [TaxId:9606] [187771] (5 PDB entries)

    4. Species Mycobacterium tuberculosis [TaxId:1773] [256094] (1 PDB entry)

    5. Species Mycobacterium tuberculosis [TaxId:83332] [261127] (2 PDB entries)

    6. Species Thermus thermophilus HB8 [TaxId:300852] [188102] (1 PDB entry)

More info for Family c.14.1.3: Crotonase-like

Timeline for Family c.14.1.3: Crotonase-like:

• Family c.14.1.3: Crotonase-like first appeared (with stable ids) in SCOP 1.55
  
• Family c.14.1.3: Crotonase-like appears in SCOPe 2.07