SCOPe 2.08: Protein: Glycerol-3- phosphate dehydrogenase

Lineage for Protein: Glycerol-3- phosphate dehydrogenase

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

Family c.2.1.6: 6-phosphogluconate dehydrogenase-like, N-terminal domain [51868] (19 proteins)
the beta-sheet is extended to 8 strands, order 32145678; strands 7 & 8 are antiparallel to the rest
C-terminal domains also show some similarity

Protein Glycerol-3- phosphate dehydrogenase [51881] (2 species)

Species:

Archaeoglobus fulgidus [TaxId:2234] [117433] (1 PDB entry)
Uniprot O29390
- Domains for 1txg:
  1. Domain d1txga2: 1txg A:1-180 [112776]
    Other proteins in same PDB: d1txga1, d1txgb1
    complexed with gol, nh4, so4
  2. Domain d1txgb2: 1txg B:1-180 [112778]
    Other proteins in same PDB: d1txga1, d1txgb1
    complexed with gol, nh4, so4
Trypanosome (Leishmania mexicana) [TaxId:5665] [51882] (7 PDB entries)
1. Domain for 1evy:
  - Domain d1evya2: 1evy A:9-197 [30215]
    Other proteins in same PDB: d1evya1
    complexed with mys
2. Domain for 1evz:
  - Domain d1evza2: 1evz A:9-197 [30216]
    Other proteins in same PDB: d1evza1
    complexed with mys, nad
3. Domain for 1jdj:
  - Domain d1jdja2: 1jdj A:9-197 [71636]
    Other proteins in same PDB: d1jdja1
    complexed with cfp, mys
4. Domain for 1m66:
  - Domain d1m66a2: 1m66 A:9-197 [78690]
    Other proteins in same PDB: d1m66a1
    complexed with bcp, plm
5. Domain for 1m67:
  - Domain d1m67a2: 1m67 A:9-197 [78692]
    Other proteins in same PDB: d1m67a1
    complexed with boa, plm
6. Domains for 1n1e:
  1. Domain d1n1ea2: 1n1e A:9-197 [85257]
    Other proteins in same PDB: d1n1ea1, d1n1eb1
    complexed with nde
  2. Domain d1n1eb2: 1n1e B:9-197 [85259]
    Other proteins in same PDB: d1n1ea1, d1n1eb1
    complexed with nde
7. Domain for 1n1g:
  - Domain d1n1ga2: 1n1g A:9-197 [91543]
    Other proteins in same PDB: d1n1ga1
    complexed with bcp, plm

More info for Protein Glycerol-3- phosphate dehydrogenase from c.2.1.6: 6-phosphogluconate dehydrogenase-like, N-terminal domain

Timeline for Protein Glycerol-3- phosphate dehydrogenase from c.2.1.6: 6-phosphogluconate dehydrogenase-like, N-terminal domain:

Protein Glycerol-3- phosphate dehydrogenase from c.2.1.6: 6-phosphogluconate dehydrogenase-like, N-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein Glycerol-3- phosphate dehydrogenase from c.2.1.6: 6-phosphogluconate dehydrogenase-like, N-terminal domain appears in SCOPe 2.07