Lineage for Protein: D-xylose isomerase

  1. Root: SCOP 1.69
  2. 473232Class c: Alpha and beta proteins (a/b) [51349] (136 folds)
  3. 473233Fold c.1: TIM beta/alpha-barrel [51350] (31 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 476306Superfamily c.1.15: Xylose isomerase-like [51658] (6 families) (S)
    different families share similar but non-identical metal-binding sites
  5. 476327Family c.1.15.3: Xylose isomerase [51665] (1 protein)
  6. 476328Protein D-xylose isomerase [51666] (12 species)

Species:

  1. 476329Actinoplanes missouriensis [TaxId:1866] [51673] (14 PDB entries)
    1. Domains for 1bhw:
      1. 476382Domain d1bhwa_: 1bhw A: [29525]
      2. 476383Domain d1bhwb_: 1bhw B: [29526]
      3. 476384Domain d1bhwc_: 1bhw C: [29527]
      4. 476385Domain d1bhwd_: 1bhw D: [29528]
    2. Domains for 1xim:
      1. 476330Domain d1xima_: 1xim A: [29473]
      2. 476331Domain d1ximb_: 1xim B: [29474]
      3. 476332Domain d1ximc_: 1xim C: [29475]
      4. 476333Domain d1ximd_: 1xim D: [29476]
    3. Domains for 1xin:
      1. 476346Domain d1xina_: 1xin A: [29513]
      2. 476347Domain d1xinb_: 1xin B: [29514]
      3. 476348Domain d1xinc_: 1xin C: [29515]
      4. 476349Domain d1xind_: 1xin D: [29516]
    4. Domains for 2xim:
      1. 476342Domain d2xima_: 2xim A: [29497]
      2. 476343Domain d2ximb_: 2xim B: [29498]
      3. 476344Domain d2ximc_: 2xim C: [29499]
      4. 476345Domain d2ximd_: 2xim D: [29500]
    5. Domains for 2xin:
      1. 476350Domain d2xina_: 2xin A: [29493]
      2. 476351Domain d2xinb_: 2xin B: [29494]
      3. 476352Domain d2xinc_: 2xin C: [29495]
      4. 476353Domain d2xind_: 2xin D: [29496]
    6. Domains for 3xim:
      1. 476334Domain d3xima_: 3xim A: [29477]
      2. 476335Domain d3ximb_: 3xim B: [29478]
      3. 476336Domain d3ximc_: 3xim C: [29479]
      4. 476337Domain d3ximd_: 3xim D: [29480]
    7. Domains for 3xin:
      1. 476338Domain d3xina_: 3xin A: [29489]
      2. 476339Domain d3xinb_: 3xin B: [29490]
      3. 476340Domain d3xinc_: 3xin C: [29491]
      4. 476341Domain d3xind_: 3xin D: [29492]
    8. Domains for 4xim:
      1. 476370Domain d4xima_: 4xim A: [29485]
      2. 476371Domain d4ximb_: 4xim B: [29486]
      3. 476372Domain d4ximc_: 4xim C: [29487]
      4. 476373Domain d4ximd_: 4xim D: [29488]
    9. Domains for 5xim:
      1. 476378Domain d5xima_: 5xim A: [29521]
      2. 476379Domain d5ximb_: 5xim B: [29522]
      3. 476380Domain d5ximc_: 5xim C: [29523]
      4. 476381Domain d5ximd_: 5xim D: [29524]
    10. Domains for 5xin:
      1. 476374Domain d5xina_: 5xin A: [29481]
      2. 476375Domain d5xinb_: 5xin B: [29482]
      3. 476376Domain d5xinc_: 5xin C: [29483]
      4. 476377Domain d5xind_: 5xin D: [29484]
    11. Domains for 6xim:
      1. 476362Domain d6xima_: 6xim A: [29517]
      2. 476363Domain d6ximb_: 6xim B: [29518]
      3. 476364Domain d6ximc_: 6xim C: [29519]
      4. 476365Domain d6ximd_: 6xim D: [29520]
    12. Domains for 7xim:
      1. 476354Domain d7xima_: 7xim A: [29501]
      2. 476355Domain d7ximb_: 7xim B: [29502]
      3. 476356Domain d7ximc_: 7xim C: [29503]
      4. 476357Domain d7ximd_: 7xim D: [29504]
    13. Domains for 8xim:
      1. 476366Domain d8xima_: 8xim A: [29509]
      2. 476367Domain d8ximb_: 8xim B: [29510]
      3. 476368Domain d8ximc_: 8xim C: [29511]
      4. 476369Domain d8ximd_: 8xim D: [29512]
    14. Domains for 9xim:
      1. 476358Domain d9xima_: 9xim A: [29505]
      2. 476359Domain d9ximb_: 9xim B: [29506]
      3. 476360Domain d9ximc_: 9xim C: [29507]
      4. 476361Domain d9ximd_: 9xim D: [29508]
  2. 476386Arthrobacter, strain b3728 [TaxId:1663] [51672] (17 PDB entries)
    1. Domains for 1did:
      1. 476391Domain d1dida_: 1did A: [29459]
      2. 476392Domain d1didb_: 1did B: [29460]
    2. Domains for 1die:
      1. 476393Domain d1diea_: 1die A: [29443]
      2. 476394Domain d1dieb_: 1die B: [29444]
    3. Domains for 1xla:
      1. 476395Domain d1xlaa_: 1xla A: [29445]
      2. 476396Domain d1xlab_: 1xla B: [29446]
    4. Domains for 1xlb:
      1. 476403Domain d1xlba_: 1xlb A: [29465]
      2. 476404Domain d1xlbb_: 1xlb B: [29466]
    5. Domains for 1xlc:
      1. 476405Domain d1xlca_: 1xlc A: [29447]
      2. 476406Domain d1xlcb_: 1xlc B: [29448]
    6. Domains for 1xld:
      1. 476397Domain d1xlda_: 1xld A: [29449]
      2. 476398Domain d1xldb_: 1xld B: [29450]
    7. Domains for 1xle:
      1. 476417Domain d1xlea_: 1xle A: [29471]
      2. 476418Domain d1xleb_: 1xle B: [29472]
    8. Domains for 1xlf:
      1. 476399Domain d1xlfa_: 1xlf A: [29451]
      2. 476400Domain d1xlfb_: 1xlf B: [29452]
    9. Domains for 1xlg:
      1. 476407Domain d1xlga_: 1xlg A: [29461]
      2. 476408Domain d1xlgb_: 1xlg B: [29462]
    10. Domains for 1xlh:
      1. 476409Domain d1xlha_: 1xlh A: [29453]
      2. 476410Domain d1xlhb_: 1xlh B: [29454]
    11. Domains for 1xli:
      1. 476401Domain d1xlia_: 1xli A: [29455]
      2. 476402Domain d1xlib_: 1xli B: [29456]
    12. Domains for 1xlj:
      1. 476411Domain d1xlja_: 1xlj A: [29463]
      2. 476412Domain d1xljb_: 1xlj B: [29464]
    13. Domains for 1xlk:
      1. 476413Domain d1xlka_: 1xlk A: [29469]
      2. 476414Domain d1xlkb_: 1xlk B: [29470]
    14. Domains for 1xll:
      1. 476415Domain d1xlla_: 1xll A: [29467]
      2. 476416Domain d1xllb_: 1xll B: [29468]
    15. Domains for 1xlm:
      1. 476389Domain d1xlma_: 1xlm A: [29441]
      2. 476390Domain d1xlmb_: 1xlm B: [29442]
    16. Domains for 4xia:
      1. 476387Domain d4xiaa_: 4xia A: [29439]
      2. 476388Domain d4xiab_: 4xia B: [29440]
    17. Domains for 5xia:
      1. 476419Domain d5xiaa_: 5xia A: [29457]
      2. 476420Domain d5xiab_: 5xia B: [29458]
  3. 476421Bacillus stearothermophilus [TaxId:1422] [51675] (1 PDB entry)
  4. 476426Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId:33950] [51674] (1 PDB entry)
  5. 476431Streptomyces albus [TaxId:1888] [51667] (1 PDB entry)
  6. 476433Streptomyces diastaticus, M1033 [TaxId:1956] [51671] (2 PDB entries)
    1. Domain for 1clk:
    2. Domains for 1qt1:
      1. 476434Domain d1qt1a_: 1qt1 A: [29436]
      2. 476435Domain d1qt1b_: 1qt1 B: [29437]
  7. 476437Streptomyces murinus [TaxId:33900] [51668] (1 PDB entry)
  8. 476440Streptomyces olivochromogenes [TaxId:1963] [51669] (9 PDB entries)
    1. Domain for 1muw:
    2. Domain for 1s5m:
    3. Domain for 1s5n:
    4. Domains for 1xya:
      1. 476446Domain d1xyaa_: 1xya A: [29411]
      2. 476447Domain d1xyab_: 1xya B: [29412]
    5. Domains for 1xyb:
      1. 476452Domain d1xyba_: 1xyb A: [29417]
      2. 476453Domain d1xybb_: 1xyb B: [29418]
    6. Domains for 1xyc:
      1. 476454Domain d1xyca_: 1xyc A: [29419]
      2. 476455Domain d1xycb_: 1xyc B: [29420]
    7. Domains for 1xyl:
      1. 476448Domain d1xyla_: 1xyl A: [29413]
      2. 476449Domain d1xylb_: 1xyl B: [29414]
    8. Domains for 1xym:
      1. 476450Domain d1xyma_: 1xym A: [29415]
      2. 476451Domain d1xymb_: 1xym B: [29416]
    9. Domains for 2gyi:
      1. 476444Domain d2gyia_: 2gyi A: [29409]
      2. 476445Domain d2gyib_: 2gyi B: [29410]
  9. 476456Streptomyces rubiginosus [TaxId:1929] [51670] (19 PDB entries)
    1. Domain for 1gw9:
    2. Domain for 1mnz:
    3. Domains for 1o1h:
      1. 476458Domain d1o1ha_: 1o1h A: [81044]
      2. 476459Domain d1o1hb_: 1o1h B: [81045]
    4. Domains for 1oad:
      1. 476460Domain d1oada_: 1oad A: [81253]
      2. 476461Domain d1oadb_: 1oad B: [81254]
    5. Domain for 1xib:
    6. Domain for 1xic:
    7. Domain for 1xid:
    8. Domain for 1xie:
    9. Domain for 1xif:
    10. Domain for 1xig:
    11. Domain for 1xih:
    12. Domain for 1xii:
    13. Domain for 1xij:
    14. Domain for 1xis:
    15. Domain for 2xis:
    16. Domain for 3xis:
    17. Domain for 4xis:
    18. Domain for 8xia:
    19. Domain for 9xia:
  10. 476478Thermotoga neapolitana [TaxId:2337] [51676] (1 PDB entry)
  11. 476481Thermus aquaticus, subsp. Caldophilus [TaxId:271] [51677] (1 PDB entry)
  12. 476486Thermus aquaticus, subsp. Thermophilus [TaxId:271] [51678] (1 PDB entry)

More info for Protein D-xylose isomerase from c.1.15.3: Xylose isomerase

Timeline for Protein D-xylose isomerase from c.1.15.3: Xylose isomerase: