SCOPe 2.07: Family c.1.15.3: Xylose isomerase

Lineage for Family c.1.15.3: Xylose isomerase

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.15: Xylose isomerase-like [51658] (8 families)
   different families share similar but non-identical metal-binding sites

5. Family c.1.15.3: Xylose isomerase [51665] (2 proteins)

Proteins:

1. D-xylose isomerase [51666] (13 species)

   1. Species Actinoplanes missouriensis [TaxId:1866] [51673] (14 PDB entries)

   2. Species Arthrobacter, strain b3728 [TaxId:1663] [51672] (17 PDB entries)

   3. Species Bacillus stearothermophilus [TaxId:1422] [51675] (1 PDB entry)

   4. Species Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId:33950] [51674] (1 PDB entry)

   5. Species Streptomyces albus [TaxId:1888] [51667] (1 PDB entry)

   6. Species Streptomyces diastaticus, M1033 [TaxId:1956] [51671] (2 PDB entries)

   7. Species Streptomyces murinus [TaxId:33900] [51668] (1 PDB entry)

   8. Species Streptomyces olivochromogenes [TaxId:1963] [51669] (9 PDB entries)

   9. Species Streptomyces rubiginosus [TaxId:1929] [51670] (89 PDB entries)

   10. Species Streptomyces sp. [TaxId:253732] [196714] (2 PDB entries)

   11. Species Thermotoga neapolitana [TaxId:2337] [51676] (1 PDB entry)

   12. Species Thermus aquaticus, subsp. Caldophilus [TaxId:271] [51677] (1 PDB entry)

   13. Species Thermus aquaticus, subsp. Thermophilus [TaxId:271] [51678] (1 PDB entry)

2. automated matches [190298] (3 species)
   not a true protein

   1. Species Paenibacillus sp. [TaxId:1079050] [362188] (1 PDB entry)

   2. Species Streptomyces rubiginosus [TaxId:1929] [187248] (15 PDB entries)

   3. Species Streptomyces sp. [TaxId:463642] [377717] (2 PDB entries)

More info for Family c.1.15.3: Xylose isomerase

Timeline for Family c.1.15.3: Xylose isomerase:

• Family c.1.15.3: Xylose isomerase first appeared (with stable ids) in SCOP 1.55
  
• Family c.1.15.3: Xylose isomerase appears in SCOPe 2.06
  
• Family c.1.15.3: Xylose isomerase appears in the current release, SCOPe 2.08