SCOPe 2.04: Family c.1.14.1: RuBisCo, large subunit, C-terminal domain

Lineage for Family c.1.14.1: RuBisCo, large subunit, C-terminal domain

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

Proteins:

1. Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651] (12 species)

   1. Species Alcaligenes eutrophus [TaxId:106590] [51655] (1 PDB entry)

   2. Species Chlorobium tepidum [TaxId:1097] [117389] (2 PDB entries)
      Uniprot Q8KBL4 1-428

   3. Species Galdieria partita [TaxId:83374] [51654] (2 PDB entries)

   4. Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [69403] (4 PDB entries)

   5. Species Halothiobacillus neapolitanus [TaxId:927] [141849] (1 PDB entry)
      Uniprot O85040 143-460

   6. Species Pyrococcus horikoshii [TaxId:53953] [141850] (3 PDB entries)
      Uniprot O58677 134-424

   7. Species Rhodospirillum rubrum [TaxId:1085] [51657] (5 PDB entries)

   8. Species Rice (Oryza sativa) [TaxId:4530] [117390] (3 PDB entries)
      Uniprot P12089

   9. Species Spinach (Spinacia oleracea) [TaxId:3562] [51653] (10 PDB entries)

   10. Species Synechococcus sp., strain pcc 6301 [TaxId:1131] [51656] (2 PDB entries)

   11. Species Thermococcus kodakaraensis [TaxId:311400] [69404] (2 PDB entries)

   12. Species Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId:4097] [51652] (5 PDB entries)

2. automated matches [226984] (5 species)
   not a true protein

   1. Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [225548] (9 PDB entries)

   2. Species Pea (Pisum sativum) [TaxId:3888] [226514] (2 PDB entries)

   3. Species Red algae (Galdieria sulphuraria) [TaxId:130081] [226525] (3 PDB entries)

   4. Species Rhodopseudomonas palustris [TaxId:258594] [257017] (1 PDB entry)

   5. Species Thermosynechococcus elongatus [TaxId:197221] [226344] (2 PDB entries)

More info for Family c.1.14.1: RuBisCo, large subunit, C-terminal domain

Timeline for Family c.1.14.1: RuBisCo, large subunit, C-terminal domain:

• Family c.1.14.1: RuBisCo, large subunit, C-terminal domain first appeared (with stable ids) in SCOP 1.55
  
• Family c.1.14.1: RuBisCo, large subunit, C-terminal domain appears in SCOPe 2.03
  
• Family c.1.14.1: RuBisCo, large subunit, C-terminal domain appears in SCOPe 2.05
  
• Family c.1.14.1: RuBisCo, large subunit, C-terminal domain appears in the current release, SCOPe 2.08