SCOPe 2.05: Protein: Phosphotriesterase (parathion hydrolase, PTE)

Lineage for Protein: Phosphotriesterase (parathion hydrolase, PTE)

Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families)
the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
has transition metal ions bound inside the barrel
Family c.1.9.3: Phosphotriesterase-like [51564] (3 proteins)
automatically mapped to Pfam PF02126
Protein Phosphotriesterase (parathion hydrolase, PTE) [51565] (4 species)

Species:

Agrobacterium tumefaciens [TaxId:358] [141815] (15 PDB entries)
Uniprot Q93LD7 32-360
1. Domain for 2d2g:
  - Domain d2d2ga1: 2d2g A:33-361 [131173]
    complexed with co, co2, dzz
2. Domain for 2r1k:
  - Domain d2r1ka_: 2r1k A: [167919]
    automated match to d2d2ga1
    complexed with co, dpf, edo, fe2
3. Domain for 2r1l:
  - Domain d2r1la_: 2r1l A: [167920]
    automated match to d2d2ga1
    complexed with co, dpj, edo, fe2
4. Domain for 2r1m:
  - Domain d2r1ma_: 2r1m A: [167921]
    automated match to d2d2ga1
    complexed with co, dpf, edo, fe2
5. Domain for 2r1n:
  - Domain d2r1na_: 2r1n A: [167922]
    automated match to d2d2ga1
    complexed with co, epl, fe2
6. Domain for 2r1p:
  - Domain d2r1pa_: 2r1p A: [167923]
    automated match to d2d2ga1
    complexed with co, dpj, edo, fe2
7. Domain for 3a3w:
  - Domain d3a3wa_: 3a3w A: [171709]
    automated match to d2d2ga1
    complexed with co, epl; mutant
8. Domain for 3a3x:
  - Domain d3a3xa_: 3a3x A: [171710]
    automated match to d2d2ga1
    complexed with co; mutant
9. Domain for 3a4j:
  - Domain d3a4ja_: 3a4j A: [171720]
    automated match to d2d2ga1
    complexed with co, edo
10. Domain for 3c86:
  - Domain d3c86a_: 3c86 A: [173082]
    automated match to d2d2ga1
    complexed with co, dpj, edo, fe2
11. Domain for 3ood:
  - Domain d3ooda_: 3ood A: [183202]
    automated match to d2d2ga1
    complexed with co, epl; mutant
12. Domain for 3oqe:
  - Domain d3oqea_: 3oqe A: [183235]
    automated match to d2d2ga1
    complexed with co, edo; mutant
13. Domain for 3so7:
  - Domain d3so7a_: 3so7 A: [185468]
    automated match to d2d2ga1
    complexed with co, na, po4
14. Domain for 3wml:
  - Domain d3wmla_: 3wml A: [265690]
    automated match to d2r1la_
    complexed with co, edo, fe2; mutant
15. Domain for 4np7:
  - Domain d4np7a_: 4np7 A: [259839]
    automated match to d2r1la_
    complexed with co, dpj, edo, fe2; mutant
Brevundimonas diminuta [TaxId:293] [193602] (5 PDB entries)
1. Domains for 3ur2:
  1. Domain d3ur2a_: 3ur2 A: [193603]
    automated match to d1p6cb_
    complexed with co, edo, imd; mutant
  2. Domain d3ur2b_: 3ur2 B: [201105]
    automated match to d3ur2a_
    complexed with co, edo, imd; mutant
2. Domains for 3ura:
  1. Domain d3uraa_: 3ura A: [194855]
    automated match to d1p6cb_
    complexed with co, imd; mutant
  2. Domain d3urab_: 3ura B: [194856]
    automated match to d1p6cb_
    complexed with co, imd; mutant
3. Domains for 3urb:
  1. Domain d3urba_: 3urb A: [194864]
    automated match to d1p6cb_
    complexed with co, dpf, imd; mutant
  2. Domain d3urbb_: 3urb B: [194863]
    automated match to d1p6cb_
    complexed with co, dpf, imd; mutant
4. Domains for 3urn:
  1. Domain d3urna_: 3urn A: [194861]
    automated match to d1p6cb_
    complexed with co, imd, qmp; mutant
  2. Domain d3urnb_: 3urn B: [194862]
    automated match to d1p6cb_
    complexed with co, imd, qmp; mutant
5. Domains for 3urq:
  1. Domain d3urqa_: 3urq A: [194860]
    automated match to d1p6cb_
    complexed with co, imd, qmp; mutant
  2. Domain d3urqb_: 3urq B: [194859]
    automated match to d1p6cb_
    complexed with co, imd, qmp; mutant
Flavobacterium sp. atcc 27551 [TaxId:74567] [102087] (2 PDB entries)
identical sequence to the Pseudomonas diminuta PTE
1. Domains for 1p6b:
  1. Domain d1p6ba_: 1p6b A: [94163]
    complexed with ebp, efs, zn; mutant
  2. Domain d1p6bb_: 1p6b B: [94164]
    complexed with ebp, efs, zn; mutant
2. Domains for 1p6c:
  1. Domain d1p6ca_: 1p6c A: [94165]
    complexed with dii, ebp, zn; mutant
  2. Domain d1p6cb_: 1p6c B: [94166]
    complexed with dii, ebp, zn; mutant
Pseudomonas diminuta [TaxId:293] [51566] (22 PDB entries)
Uniprot P0A434 30-365
1. Domains for 1dpm:
  1. Domain d1dpma_: 1dpm A: [29062]
    complexed with ebp, fmt, zn
  2. Domain d1dpmb_: 1dpm B: [29063]
    complexed with ebp, fmt, zn
2. Domain for 1eyw:
  - Domain d1eywa_: 1eyw A: [29057]
    complexed with pel, ten, zn
3. Domains for 1ez2:
  1. Domain d1ez2a_: 1ez2 A: [29060]
    complexed with dii, zn
  2. Domain d1ez2b_: 1ez2 B: [29061]
    complexed with dii, zn
4. Domains for 1hzy:
  1. Domain d1hzya_: 1hzy A: [61468]
    complexed with edo, fmt, na, pel, zn
  2. Domain d1hzyb_: 1hzy B: [61469]
    complexed with edo, fmt, na, pel, zn
5. Domains for 1i0b:
  1. Domain d1i0ba_: 1i0b A: [61483]
    complexed with edo, fmt, mn, na, pel
  2. Domain d1i0bb_: 1i0b B: [61484]
    complexed with edo, fmt, mn, na, pel
6. Domains for 1i0d:
  1. Domain d1i0da_: 1i0d A: [61487]
    complexed with cd, edo, fmt, na, pel, zn
  2. Domain d1i0db_: 1i0d B: [61488]
    complexed with cd, edo, fmt, na, pel, zn
7. Domains for 1jgm:
  1. Domain d1jgma_: 1jgm A: [62953]
    complexed with cd, edo, na, pel
  2. Domain d1jgmb_: 1jgm B: [62954]
    complexed with cd, edo, na, pel
8. Domains for 1psc:
  1. Domain d1psca_: 1psc A: [29058]
    complexed with cd, ebp, fmt
  2. Domain d1pscb_: 1psc B: [29059]
    complexed with cd, ebp, fmt
9. Domain for 1pta:
  - Domain d1ptaa_: 1pta A: [29064]
10. Domains for 1qw7:
  1. Domain d1qw7a_: 1qw7 A: [111660]
    complexed with co, ebp, na
  2. Domain d1qw7b_: 1qw7 B: [111661]
    complexed with co, ebp, na
11. Domains for 2o4m:
  1. Domain d2o4ma_: 2o4m A: [166538]
    automated match to d1i0bb_
    complexed with acy, cac, gol, zn; mutant
  2. Domain d2o4mb_: 2o4m B: [166539]
    automated match to d1i0bb_
    complexed with acy, cac, gol, zn; mutant
  3. Domain d2o4mc_: 2o4m C: [166540]
    automated match to d1i0bb_
    complexed with acy, cac, gol, zn; mutant
  4. Domain d2o4mp_: 2o4m P: [166541]
    automated match to d1i0bb_
    complexed with acy, cac, gol, zn; mutant
12. Domains for 2o4q:
  1. Domain d2o4qa_: 2o4q A: [166544]
    automated match to d1i0bb_
    complexed with cac, zn; mutant
  2. Domain d2o4qb_: 2o4q B: [166545]
    automated match to d1i0bb_
    complexed with cac, zn; mutant
  3. Domain d2o4qk_: 2o4q K: [166546]
    automated match to d1i0bb_
    complexed with cac, zn; mutant
  4. Domain d2o4qp_: 2o4q P: [166547]
    automated match to d1i0bb_
    complexed with cac, zn; mutant
13. Domains for 2ob3:
  1. Domain d2ob3a_: 2ob3 A: [166617]
    automated match to d1eywa_
    complexed with btb, zn; mutant
  2. Domain d2ob3b_: 2ob3 B: [166618]
    automated match to d1eywa_
    complexed with btb, zn; mutant
14. Domains for 2oql:
  1. Domain d2oqla_: 2oql A: [166826]
    automated match to d1hzya_
    complexed with btb, gol, zn; mutant
  2. Domain d2oqlb_: 2oql B: [166827]
    automated match to d1hzya_
    complexed with btb, gol, zn; mutant
15. Domains for 3cak:
  1. Domain d3caka_: 3cak A: [173098]
    automated match to d1hzya_
    complexed with btb, co, dpf, efs
  2. Domain d3cakb_: 3cak B: [173099]
    automated match to d1hzya_
    complexed with btb, co, dpf, efs
16. Domains for 3cs2:
  1. Domain d3cs2a_: 3cs2 A: [173423]
    automated match to d1i0bb_
    complexed with cac, co; mutant
  2. Domain d3cs2b_: 3cs2 B: [173424]
    automated match to d1i0bb_
    complexed with cac, co; mutant
  3. Domain d3cs2k_: 3cs2 K: [173425]
    automated match to d1i0bb_
    complexed with cac, co; mutant
  4. Domain d3cs2p_: 3cs2 P: [173426]
    automated match to d1i0bb_
    complexed with cac, co; mutant
17. Domains for 3e3h:
  1. Domain d3e3ha_: 3e3h A: [174594]
    automated match to d1qw7a_
    complexed with co, ebp; mutant
  2. Domain d3e3hb_: 3e3h B: [174595]
    automated match to d1qw7a_
    complexed with co, ebp; mutant
18. Domains for 3upm:
  1. Domain d3upma_: 3upm A: [194866]
    automated match to d2oqlb_
    complexed with co; mutant
  2. Domain d3upmb_: 3upm B: [194865]
    automated match to d2oqlb_
    complexed with co; mutant
19. Domains for 3ur5:
  1. Domain d3ur5a_: 3ur5 A: [194858]
    automated match to d3caka_
    complexed with co, dpf; mutant
  2. Domain d3ur5b_: 3ur5 B: [194857]
    automated match to d3caka_
    complexed with co, dpf; mutant
20. Domains for 4pbe:
  1. Domain d4pbea_: 4pbe A: [272291]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d4pbeg_: 4pbe G: [272289]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
21. Domains for 4zst:
  1. Domain d4zsta_: 4zst A: [276622]
    automated match to d1qw7a_
    complexed with co; mutant
  2. Domain d4zstb_: 4zst B: [276623]
    automated match to d1qw7a_
    complexed with co; mutant
22. Domains for 4zsu:
  1. Domain d4zsua_: 4zsu A: [276620]
    automated match to d1qw7a_
    complexed with co; mutant
  2. Domain d4zsub_: 4zsu B: [276621]
    automated match to d1qw7a_
    complexed with co; mutant

More info for Protein Phosphotriesterase (parathion hydrolase, PTE) from c.1.9.3: Phosphotriesterase-like

Timeline for Protein Phosphotriesterase (parathion hydrolase, PTE) from c.1.9.3: Phosphotriesterase-like:

Protein Phosphotriesterase (parathion hydrolase, PTE) from c.1.9.3: Phosphotriesterase-like first appeared (with stable ids) in SCOP 1.55, called Protein Phosphotriesterase from c.1.9.3: Phosphotriesterase-like
Protein Phosphotriesterase (parathion hydrolase, PTE) from c.1.9.3: Phosphotriesterase-like appears in SCOPe 2.04
Protein Phosphotriesterase (parathion hydrolase, PTE) from c.1.9.3: Phosphotriesterase-like appears in SCOPe 2.06
Protein Phosphotriesterase (parathion hydrolase, PTE) from c.1.9.3: Phosphotriesterase-like appears in the current release, SCOPe 2.08