SCOPe 2.08: Protein: Phosphotriesterase (parathion hydrolase, PTE)

Lineage for Protein: Phosphotriesterase (parathion hydrolase, PTE)

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families)
the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
has transition metal ions bound inside the barrel
Family c.1.9.3: Phosphotriesterase-like [51564] (3 proteins)
automatically mapped to Pfam PF02126
Protein Phosphotriesterase (parathion hydrolase, PTE) [51565] (5 species)

Species:

Agrobacterium tumefaciens [TaxId:358] [141815] (17 PDB entries)
Uniprot Q93LD7 32-360
1. Domain for 2d2g:
  - Domain d2d2ga1: 2d2g A:33-361 [131173]
    complexed with co, dzz
2. Domain for 2r1k:
  - Domain d2r1ka_: 2r1k A: [167919]
    automated match to d2d2ga1
    complexed with co, dpf, edo, fe2
3. Domain for 2r1l:
  - Domain d2r1la_: 2r1l A: [167920]
    automated match to d2d2ga1
    complexed with co, dpj, edo, fe2
4. Domain for 2r1m:
  - Domain d2r1ma_: 2r1m A: [167921]
    automated match to d2d2ga1
    complexed with co, dpf, edo, fe2
5. Domain for 2r1n:
  - Domain d2r1na_: 2r1n A: [167922]
    automated match to d2d2ga1
    complexed with co, epl, fe2
6. Domain for 2r1o:
  - Domain d2r1oa_: 2r1o A: [412943]
    automated match to d3wmla_
    complexed with co, dpj, edo, fe2
7. Domain for 2r1p:
  - Domain d2r1pa_: 2r1p A: [167923]
    automated match to d2d2ga1
    complexed with co, dpj, edo, fe2
8. Domain for 3a3w:
  - Domain d3a3wa_: 3a3w A: [171709]
    automated match to d2d2ga1
    complexed with co, epl; mutant
9. Domain for 3a3x:
  - Domain d3a3xa1: 3a3x A:36-361 [171710]
    Other proteins in same PDB: d3a3xa2
    automated match to d2d2ga1
    complexed with co; mutant
10. Domain for 3a4j:
  - Domain d3a4ja_: 3a4j A: [171720]
    automated match to d2d2ga1
    complexed with co, edo
11. Domain for 3c86:
  - Domain d3c86a_: 3c86 A: [173082]
    automated match to d2d2ga1
    complexed with co, dpj, edo, fe2
12. Domain for 3ood:
  - Domain d3ooda_: 3ood A: [183202]
    automated match to d2d2ga1
    complexed with co, epl; mutant
13. Domain for 3oqe:
  - Domain d3oqea_: 3oqe A: [183235]
    automated match to d2d2ga1
    complexed with co, edo; mutant
14. Domain for 3so7:
  - Domain d3so7a_: 3so7 A: [185468]
    automated match to d2d2ga1
    complexed with co, na, po4
15. Domain for 3wml:
  - Domain d3wmla_: 3wml A: [265690]
    automated match to d2r1la_
    complexed with co, edo, fe2; mutant
16. Domain for 4np7:
  - Domain d4np7a_: 4np7 A: [259839]
    automated match to d2r1la_
    complexed with co, dpj, edo, fe2; mutant
17. Domain for 5vej:
  - Domain d5veja_: 5vej A: [336905]
    automated match to d3c86a_
    complexed with act, co, f
Brevundimonas diminuta [TaxId:293] [193602] (6 PDB entries)
1. Domains for 3ur2:
  1. Domain d3ur2a_: 3ur2 A: [193603]
    automated match to d1p6cb_
    complexed with co, edo, imd; mutant
  2. Domain d3ur2b_: 3ur2 B: [201105]
    automated match to d3ur2a_
    complexed with co, edo, imd; mutant
2. Domains for 3ura:
  1. Domain d3uraa_: 3ura A: [194855]
    automated match to d1p6cb_
    complexed with co, imd; mutant
  2. Domain d3urab_: 3ura B: [194856]
    automated match to d1p6cb_
    complexed with co, imd; mutant
3. Domains for 3urb:
  1. Domain d3urba_: 3urb A: [194864]
    automated match to d1p6cb_
    complexed with co, dpf, imd; mutant
  2. Domain d3urbb_: 3urb B: [194863]
    automated match to d1p6cb_
    complexed with co, dpf, imd; mutant
4. Domains for 3urn:
  1. Domain d3urna_: 3urn A: [194861]
    automated match to d1p6cb_
    complexed with co, imd, qmp; mutant
  2. Domain d3urnb_: 3urn B: [194862]
    automated match to d1p6cb_
    complexed with co, imd, qmp; mutant
5. Domains for 3urq:
  1. Domain d3urqa_: 3urq A: [194860]
    automated match to d1p6cb_
    complexed with co, imd, qmp; mutant
  2. Domain d3urqb_: 3urq B: [194859]
    automated match to d1p6cb_
    complexed with co, imd, qmp; mutant
6. Domains for 6gbl:
  1. Domain d6gbla_: 6gbl A: [359275]
    automated match to d1p6bb_
    complexed with cac, edo, fmt, zn
  2. Domain d6gblb_: 6gbl B: [359269]
    automated match to d1p6bb_
    complexed with cac, edo, fmt, zn
Flavobacterium sp. atcc 27551 [TaxId:74567] [102087] (2 PDB entries)
identical sequence to the Pseudomonas diminuta PTE
1. Domains for 1p6b:
  1. Domain d1p6ba_: 1p6b A: [94163]
    complexed with ebp, efs, zn; mutant
  2. Domain d1p6bb_: 1p6b B: [94164]
    complexed with ebp, efs, zn; mutant
2. Domains for 1p6c:
  1. Domain d1p6ca_: 1p6c A: [94165]
    complexed with dii, ebp, zn; mutant
  2. Domain d1p6cb_: 1p6c B: [94166]
    complexed with dii, ebp, zn; mutant
Pseudomonas diminuta [TaxId:293] [51566] (41 PDB entries)
Uniprot P0A434 30-365
1. Domains for 1dpm:
  1. Domain d1dpma_: 1dpm A: [29062]
    complexed with ebp, fmt, zn
  2. Domain d1dpmb_: 1dpm B: [29063]
    complexed with ebp, fmt, zn
2. Domain for 1eyw:
  - Domain d1eywa_: 1eyw A: [29057]
    complexed with pel, ten, zn
3. Domains for 1ez2:
  1. Domain d1ez2a_: 1ez2 A: [29060]
    complexed with dii, zn
  2. Domain d1ez2b_: 1ez2 B: [29061]
    complexed with dii, zn
4. Domains for 1hzy:
  1. Domain d1hzya_: 1hzy A: [61468]
    complexed with edo, fmt, na, pel, zn
  2. Domain d1hzyb_: 1hzy B: [61469]
    complexed with edo, fmt, na, pel, zn
5. Domain for 1i03:
  - Domain d1i03b_: 1i03 B: [302506]
    automated match to d1i0da_
    complexed with cbx, cd, egl, na, pel
6. Domains for 1i0b:
  1. Domain d1i0ba_: 1i0b A: [61483]
    complexed with edo, fmt, mn, na, pel
  2. Domain d1i0bb_: 1i0b B: [61484]
    complexed with edo, fmt, mn, na, pel
7. Domains for 1i0d:
  1. Domain d1i0da_: 1i0d A: [61487]
    complexed with cd, edo, fmt, na, pel, zn
  2. Domain d1i0db_: 1i0d B: [61488]
    complexed with cd, edo, fmt, na, pel, zn
8. Domains for 1jgm:
  1. Domain d1jgma_: 1jgm A: [62953]
    complexed with cd, edo, na, pel
  2. Domain d1jgmb_: 1jgm B: [62954]
    complexed with cd, edo, na, pel
9. Domains for 1psc:
  1. Domain d1psca_: 1psc A: [29058]
    complexed with cd, ebp, fmt
  2. Domain d1pscb_: 1psc B: [29059]
    complexed with cd, ebp, fmt
10. Domain for 1pta:
  - Domain d1ptaa_: 1pta A: [29064]
11. Domains for 1qw7:
  1. Domain d1qw7a_: 1qw7 A: [111660]
    complexed with co, ebp, na
  2. Domain d1qw7b_: 1qw7 B: [111661]
    complexed with co, ebp, na
12. Domains for 2o4m:
  1. Domain d2o4ma_: 2o4m A: [166538]
    automated match to d1i0bb_
    complexed with acy, cac, gol, zn; mutant
  2. Domain d2o4mb_: 2o4m B: [166539]
    automated match to d1i0bb_
    complexed with acy, cac, gol, zn; mutant
  3. Domain d2o4mc_: 2o4m C: [166540]
    automated match to d1i0bb_
    complexed with acy, cac, gol, zn; mutant
  4. Domain d2o4mp_: 2o4m P: [166541]
    automated match to d1i0bb_
    complexed with acy, cac, gol, zn; mutant
13. Domains for 2o4q:
  1. Domain d2o4qa_: 2o4q A: [166544]
    automated match to d1i0bb_
    complexed with cac, zn; mutant
  2. Domain d2o4qb_: 2o4q B: [166545]
    automated match to d1i0bb_
    complexed with cac, zn; mutant
  3. Domain d2o4qk_: 2o4q K: [166546]
    automated match to d1i0bb_
    complexed with cac, zn; mutant
  4. Domain d2o4qp_: 2o4q P: [166547]
    automated match to d1i0bb_
    complexed with cac, zn; mutant
14. Domains for 2ob3:
  1. Domain d2ob3a_: 2ob3 A: [166617]
    automated match to d1eywa_
    complexed with btb, zn; mutant
  2. Domain d2ob3b_: 2ob3 B: [166618]
    automated match to d1eywa_
    complexed with btb, zn; mutant
15. Domains for 2oql:
  1. Domain d2oqla_: 2oql A: [166826]
    automated match to d1hzya_
    complexed with btb, gol, zn; mutant
  2. Domain d2oqlb_: 2oql B: [166827]
    automated match to d1hzya_
    complexed with btb, gol, zn; mutant
16. Domains for 3cak:
  1. Domain d3caka_: 3cak A: [173098]
    automated match to d1hzya_
    complexed with btb, co, dpf, efs
  2. Domain d3cakb_: 3cak B: [173099]
    automated match to d1hzya_
    complexed with btb, co, dpf, efs
17. Domains for 3cs2:
  1. Domain d3cs2a_: 3cs2 A: [173423]
    automated match to d1i0bb_
    complexed with cac, co; mutant
  2. Domain d3cs2b_: 3cs2 B: [173424]
    automated match to d1i0bb_
    complexed with cac, co; mutant
  3. Domain d3cs2k_: 3cs2 K: [173425]
    automated match to d1i0bb_
    complexed with cac, co; mutant
  4. Domain d3cs2p_: 3cs2 P: [173426]
    automated match to d1i0bb_
    complexed with cac, co; mutant
18. Domains for 3e3h:
  1. Domain d3e3ha_: 3e3h A: [174594]
    automated match to d1qw7a_
    complexed with co, ebp; mutant
  2. Domain d3e3hb_: 3e3h B: [174595]
    automated match to d1qw7a_
    complexed with co, ebp; mutant
19. Domains for 3upm:
  1. Domain d3upma_: 3upm A: [194866]
    automated match to d2oqlb_
    complexed with co; mutant
  2. Domain d3upmb_: 3upm B: [194865]
    automated match to d2oqlb_
    complexed with co; mutant
20. Domains for 3ur5:
  1. Domain d3ur5a_: 3ur5 A: [194858]
    automated match to d3caka_
    complexed with co, dpf; mutant
  2. Domain d3ur5b_: 3ur5 B: [194857]
    automated match to d3caka_
    complexed with co, dpf; mutant
21. Domains for 4pbe:
  1. Domain d4pbea_: 4pbe A: [272291]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d4pbeg_: 4pbe G: [272289]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
22. Domains for 4zst:
  1. Domain d4zsta_: 4zst A: [276622]
    automated match to d1qw7a_
    complexed with co; mutant
  2. Domain d4zstb_: 4zst B: [276623]
    automated match to d1qw7a_
    complexed with co; mutant
23. Domains for 4zsu:
  1. Domain d4zsua_: 4zsu A: [276620]
    automated match to d1qw7a_
    complexed with co; mutant
  2. Domain d4zsub_: 4zsu B: [276621]
    automated match to d1qw7a_
    complexed with co; mutant
24. Domains for 6fev:
  1. Domain d6feva_: 6fev A: [363217]
    automated match to d1qw7a_
    complexed with e5n, fmt, zn
  2. Domain d6fevb_: 6fev B: [363197]
    automated match to d1qw7a_
    complexed with e5n, fmt, zn
25. Domains for 6ffw:
  1. Domain d6ffwa1: 6ffw A:35-361 [365779]
    Other proteins in same PDB: d6ffwa2
    automated match to d1qw7a_
    complexed with d6k, edo, fmt, trs, zn
  2. Domain d6ffwb_: 6ffw B: [365838]
    Other proteins in same PDB: d6ffwa2
    automated match to d1qw7a_
    complexed with d6k, edo, fmt, trs, zn
26. Domain for 6for:
  - Domain d6fora_: 6for A: [365810]
    automated match to d1qw7a_
    complexed with fmt, gb, gol, so4, zn
27. Domains for 6fqe:
  1. Domain d6fqea_: 6fqe A: [365819]
    Other proteins in same PDB: d6fqeb2
    automated match to d1qw7a_
    complexed with d6k, fmt, peg, zn
  2. Domain d6fqeb1: 6fqe B:34-365 [365841]
    Other proteins in same PDB: d6fqeb2
    automated match to d1qw7a_
    complexed with d6k, fmt, peg, zn
28. Domains for 6frz:
  1. Domain d6frza_: 6frz A: [365878]
    Other proteins in same PDB: d6frzb2
    automated match to d1qw7a_
    complexed with e4t, fmt, p6g, peg, pge, trs, zn
  2. Domain d6frzb1: 6frz B:32-364 [365876]
    Other proteins in same PDB: d6frzb2
    automated match to d1qw7a_
    complexed with e4t, fmt, p6g, peg, pge, trs, zn
29. Domains for 6fs3:
  1. Domain d6fs3a_: 6fs3 A: [366445]
    automated match to d1qw7a_
    complexed with 9on, fmt, zn
  2. Domain d6fs3b_: 6fs3 B: [366461]
    automated match to d1qw7a_
    complexed with 9on, fmt, zn
30. Domains for 6fu6:
  1. Domain d6fu6a_: 6fu6 A: [366460]
    automated match to d1jgmb_
    complexed with fmt, ta8, zn
  2. Domain d6fu6b_: 6fu6 B: [366446]
    automated match to d1jgmb_
    complexed with fmt, ta8, zn
31. Domain for 6fvk:
  - Domain d6fvka_: 6fvk A: [366475]
    automated match to d1jgmb_
    complexed with e8n, e8w, fmt, gol, so4, zn
32. Domain for 6fvp:
  - Domain d6fvpa_: 6fvp A: [366840]
    automated match to d1jgmb_
    complexed with e8n, fmt, gb, gol, so4, zn
33. Domain for 6fw1:
  - Domain d6fw1a_: 6fw1 A: [366800]
    automated match to d1jgmb_
    complexed with e8n, e8w, fmt, gol, so4, zn
34. Domain for 6fwe:
  - Domain d6fwea_: 6fwe A: [366794]
    automated match to d1jgmb_
    complexed with e8n, e9e, fmt, gol, so4, zn
35. Domain for 6g0m:
  - Domain d6g0ma_: 6g0m A: [367382]
    automated match to d1jgmb_
    complexed with e8n, fmt, gol, so4, vx, zn
36. Domain for 6g1j:
  - Domain d6g1ja_: 6g1j A: [367361]
    automated match to d1jgma_
    complexed with e8n, fmt, gol, imd, so4, zn
37. Domain for 6g23:
  - Domain d6g23a_: 6g23 A: [367397]
    automated match to d1jgma_
    complexed with e8n, fmt, fu2, gol, so4, zn
38. Domain for 6g3l:
  - Domain d6g3la_: 6g3l A: [367504]
    automated match to d1qw7a_
    complexed with e8n, fmt, gb, gol, so4, zn
39. Domain for 6g3m:
  - Domain d6g3ma_: 6g3m A: [367425]
    automated match to d1jgma_
    complexed with cl, e8n, fmt, gol, so4, vx, zn
40. Domain for 6gbj:
  - Domain d6gbja_: 6gbj A: [359277]
    automated match to d3e3ha_
    complexed with edo, fmt, so4, zn
41. Domains for 6gbk:
  1. Domain d6gbka_: 6gbk A: [359270]
    automated match to d1qw7a_
    complexed with fmt, trs, zn
  2. Domain d6gbkb_: 6gbk B: [359268]
    automated match to d1qw7a_
    complexed with fmt, trs, zn
Rhizobium radiobacter [TaxId:358] [362917] (1 PDB entry)
- Domains for 5w7h:
  1. Domain d5w7ha_: 5w7h A: [362936]
    automated match to d3e3ha_
    complexed with zn
  2. Domain d5w7hb_: 5w7h B: [362918]
    automated match to d3e3ha_
    complexed with zn

More info for Protein Phosphotriesterase (parathion hydrolase, PTE) from c.1.9.3: Phosphotriesterase-like

Timeline for Protein Phosphotriesterase (parathion hydrolase, PTE) from c.1.9.3: Phosphotriesterase-like:

Protein Phosphotriesterase (parathion hydrolase, PTE) from c.1.9.3: Phosphotriesterase-like first appeared (with stable ids) in SCOP 1.55, called Protein Phosphotriesterase from c.1.9.3: Phosphotriesterase-like
Protein Phosphotriesterase (parathion hydrolase, PTE) from c.1.9.3: Phosphotriesterase-like appears in SCOPe 2.07