SCOP 1.67: Protein: alpha-subunit of urease, catalytic domain

Lineage for Protein: alpha-subunit of urease, catalytic domain

Root: SCOP 1.67
Class c: Alpha and beta proteins (a/b) [51349] (130 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (28 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.9: Metallo-dependent hydrolases [51556] (13 families)
the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
has transition metal ions bound inside the barrel
Family c.1.9.2: alpha-subunit of urease, catalytic domain [51560] (1 protein)
Protein alpha-subunit of urease, catalytic domain [51561] (3 species)

Species:

Bacillus pasteurii [TaxId:1474] [51563] (6 PDB entries)
1. Domain for 1ie7:
  - Domain d1ie7c2: 1ie7 C:132-434,C:484-570 [62316]
    Other proteins in same PDB: d1ie7a_, d1ie7b_, d1ie7c1
    complexed with ni, po4
2. Domain for 1s3t:
  - Domain d1s3tc2: 1s3t C:132-434,C:484-570 [98463]
    Other proteins in same PDB: d1s3ta_, d1s3tb_, d1s3tc1
    complexed with bo3, ni, so4
3. Domain for 1ubp:
  - Domain d1ubpc2: 1ubp C:132-434,C:484-570 [29054]
    Other proteins in same PDB: d1ubpa_, d1ubpb_, d1ubpc1
    complexed with bme, cbx, ni
4. Domain for 2ubp:
  - Domain d2ubpc2: 2ubp C:132-434,C:484-570 [29055]
    Other proteins in same PDB: d2ubpa_, d2ubpb_, d2ubpc1
5. Domain for 3ubp:
  - Domain d3ubpc2: 3ubp C:132-434,C:484-570 [29056]
    Other proteins in same PDB: d3ubpa_, d3ubpb_, d3ubpc1
6. Domain for 4ubp:
  - Domain d4ubpc2: 4ubp C:132-434,C:484-570 [29053]
    Other proteins in same PDB: d4ubpa_, d4ubpb_, d4ubpc1
    complexed with ace, hae, ni
Helicobacter pylori [TaxId:210] [69393] (2 PDB entries)
1. Domain for 1e9y:
  - Domain d1e9yb2: 1e9y B:132-431,B:481-569 [64849]
    Other proteins in same PDB: d1e9ya1, d1e9ya2, d1e9yb1
    complexed with hae, ni
2. Domain for 1e9z:
  - Domain d1e9zb2: 1e9z B:132-431,B:481-569 [64853]
    Other proteins in same PDB: d1e9za1, d1e9za2, d1e9zb1
    complexed with ni
Klebsiella aerogenes [TaxId:28451] [51562] (27 PDB entries)
1. Domain for 1a5k:
  - Domain d1a5kc2: 1a5k C:130-422,C:476-567 [29047]
    Other proteins in same PDB: d1a5ka_, d1a5kb_, d1a5kc1
    mutant
2. Domain for 1a5l:
  - Domain d1a5lc2: 1a5l C:130-422,C:476-567 [29048]
    Other proteins in same PDB: d1a5la_, d1a5lb_, d1a5lc1
    mutant
3. Domain for 1a5m:
  - Domain d1a5mc2: 1a5m C:130-422,C:476-567 [29045]
    Other proteins in same PDB: d1a5ma_, d1a5mb_, d1a5mc1
    mutant
4. Domain for 1a5n:
  - Domain d1a5nc2: 1a5n C:130-422,C:476-567 [29049]
    Other proteins in same PDB: d1a5na_, d1a5nb_, d1a5nc1
    complexed with fmt, ni; mutant
5. Domain for 1a5o:
  - Domain d1a5oc2: 1a5o C:130-422,C:476-567 [29052]
    Other proteins in same PDB: d1a5oa_, d1a5ob_, d1a5oc1
    complexed with fmt, ni; mutant
6. Domain for 1ef2:
  - Domain d1ef2a2: 1ef2 A:1130-1422,A:1476-1567 [29051]
    Other proteins in same PDB: d1ef2a1, d1ef2b_, d1ef2c_
    complexed with mn
7. Domain for 1ejr:
  - Domain d1ejrc2: 1ejr C:1130-1422,C:1476-1567 [29042]
    Other proteins in same PDB: d1ejra_, d1ejrb_, d1ejrc1
    complexed with ni; mutant
8. Domain for 1ejs:
  - Domain d1ejsc2: 1ejs C:1130-1422,C:1476-1567 [29046]
    Other proteins in same PDB: d1ejsa_, d1ejsb_, d1ejsc1
    complexed with ni; mutant
9. Domain for 1ejt:
  - Domain d1ejtc2: 1ejt C:1130-1422,C:1476-1567 [29043]
    Other proteins in same PDB: d1ejta_, d1ejtb_, d1ejtc1
    complexed with ni; mutant
10. Domain for 1eju:
  - Domain d1ejuc2: 1eju C:1130-1422,C:1476-1567 [29044]
    Other proteins in same PDB: d1ejua_, d1ejub_, d1ejuc1
    complexed with ni; mutant
11. Domain for 1ejv:
  - Domain d1ejvc2: 1ejv C:1130-1422,C:1476-1567 [29050]
    Other proteins in same PDB: d1ejva_, d1ejvb_, d1ejvc1
    complexed with ni; mutant
12. Domain for 1ejw:
  - Domain d1ejwc2: 1ejw C:1130-1422,C:1476-1567 [90456]
    Other proteins in same PDB: d1ejwa_, d1ejwb_, d1ejwc1
    complexed with ni
13. Domain for 1ejx:
  - Domain d1ejxc2: 1ejx C:1130-1422,C:1476-1567 [83185]
    Other proteins in same PDB: d1ejxa_, d1ejxb_, d1ejxc1
    complexed with kcx, ni
14. Domain for 1fwa:
  - Domain d1fwac2: 1fwa C:130-422,C:476-567 [29030]
    Other proteins in same PDB: d1fwaa_, d1fwab_, d1fwac1
    complexed with co3, ni; mutant
15. Domain for 1fwb:
  - Domain d1fwbc2: 1fwb C:130-422,C:476-567 [29031]
    Other proteins in same PDB: d1fwba_, d1fwbb_, d1fwbc1
    complexed with ni; mutant
16. Domain for 1fwc:
  - Domain d1fwcc2: 1fwc C:130-422,C:476-567 [29032]
    Other proteins in same PDB: d1fwca_, d1fwcb_, d1fwcc1
    complexed with ni; mutant
17. Domain for 1fwd:
  - Domain d1fwdc2: 1fwd C:130-422,C:476-567 [29033]
    Other proteins in same PDB: d1fwda_, d1fwdb_, d1fwdc1
    complexed with ni; mutant
18. Domain for 1fwe:
  - Domain d1fwec2: 1fwe C:130-422,C:476-567 [29037]
    Other proteins in same PDB: d1fwea_, d1fweb_, d1fwec1
    complexed with hae, ni; mutant
19. Domain for 1fwf:
  - Domain d1fwfc2: 1fwf C:130-422,C:476-567 [29028]
    Other proteins in same PDB: d1fwfa_, d1fwfb_, d1fwfc1
    complexed with ni; mutant
20. Domain for 1fwg:
  - Domain d1fwgc2: 1fwg C:130-422,C:476-567 [29035]
    Other proteins in same PDB: d1fwga_, d1fwgb_, d1fwgc1
    complexed with ni; mutant
21. Domain for 1fwh:
  - Domain d1fwhc2: 1fwh C:130-422,C:476-567 [29036]
    Other proteins in same PDB: d1fwha_, d1fwhb_, d1fwhc1
    complexed with ni; mutant
22. Domain for 1fwi:
  - Domain d1fwic2: 1fwi C:130-422,C:476-567 [29029]
    Other proteins in same PDB: d1fwia_, d1fwib_, d1fwic1
    complexed with ni; mutant
23. Domain for 1fwj:
  - Domain d1fwjc2: 1fwj C:130-422,C:476-567 [29038]
    Other proteins in same PDB: d1fwja_, d1fwjb_, d1fwjc1
    complexed with ni
24. Domain for 1kra:
  - Domain d1krac2: 1kra C:130-422,C:476-567 [29039]
    Other proteins in same PDB: d1kraa_, d1krab_, d1krac1
25. Domain for 1krb:
  - Domain d1krbc2: 1krb C:130-422,C:476-567 [29040]
    Other proteins in same PDB: d1krba_, d1krbb_, d1krbc1
    complexed with co2, ni; mutant
26. Domain for 1krc:
  - Domain d1krcc2: 1krc C:130-422,C:476-567 [29041]
    Other proteins in same PDB: d1krca_, d1krcb_, d1krcc1
    complexed with co2, ni; mutant
27. Domain for 2kau:
  - Domain d2kauc2: 2kau C:130-422,C:476-567 [29034]
    Other proteins in same PDB: d2kaua_, d2kaub_, d2kauc1
    CASP1
    complexed with cbx, ni

More info for Protein alpha-subunit of urease, catalytic domain from c.1.9.2: alpha-subunit of urease, catalytic domain

Timeline for Protein alpha-subunit of urease, catalytic domain from c.1.9.2: alpha-subunit of urease, catalytic domain:

Protein alpha-subunit of urease, catalytic domain from c.1.9.2: alpha-subunit of urease, catalytic domain first appeared (with stable ids) in SCOP 1.55
Protein alpha-subunit of urease, catalytic domain from c.1.9.2: alpha-subunit of urease, catalytic domain appears in SCOP 1.65
Protein alpha-subunit of urease, catalytic domain from c.1.9.2: alpha-subunit of urease, catalytic domain appears in SCOP 1.69
Protein alpha-subunit of urease, catalytic domain from c.1.9.2: alpha-subunit of urease, catalytic domain appears in the current release, SCOPe 2.08