SCOPe 2.06: Protein: Beta-glucosidase A

Lineage for Protein: Beta-glucosidase A

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)
Family c.1.8.4: Family 1 of glycosyl hydrolase [51521] (6 proteins)
Protein Beta-glucosidase A [51528] (9 species)

Species:

Bacillus circulans, subsp. alkalophilus [TaxId:1397] [51530] (1 PDB entry)
- Domains for 1qox:
  1. Domain d1qoxa_: 1qox A: [28965]
  2. Domain d1qoxb_: 1qox B: [28966]
  3. Domain d1qoxc_: 1qox C: [28967]
  4. Domain d1qoxd_: 1qox D: [28968]
  5. Domain d1qoxe_: 1qox E: [28969]
  6. Domain d1qoxf_: 1qox F: [28970]
  7. Domain d1qoxg_: 1qox G: [28971]
  8. Domain d1qoxh_: 1qox H: [28972]
  9. Domain d1qoxi_: 1qox I: [28973]
  10. Domain d1qoxj_: 1qox J: [28974]
  11. Domain d1qoxk_: 1qox K: [28975]
  12. Domain d1qoxl_: 1qox L: [28976]
  13. Domain d1qoxm_: 1qox M: [28977]
  14. Domain d1qoxn_: 1qox N: [28978]
  15. Domain d1qoxo_: 1qox O: [28979]
  16. Domain d1qoxp_: 1qox P: [28980]
Bacillus polymyxa [TaxId:1406] [51529] (5 PDB entries)
1. Domains for 1bga:
  1. Domain d1bgaa_: 1bga A: [28961]
  2. Domain d1bgab_: 1bga B: [28962]
  3. Domain d1bgac_: 1bga C: [28963]
  4. Domain d1bgad_: 1bga D: [28964]
2. Domains for 1bgg:
  1. Domain d1bgga_: 1bgg A: [28953]
    complexed with gco
  2. Domain d1bggb_: 1bgg B: [28954]
    complexed with gco
  3. Domain d1bggc_: 1bgg C: [28955]
    complexed with gco
  4. Domain d1bggd_: 1bgg D: [28956]
    complexed with gco
3. Domain for 1e4i:
  - Domain d1e4ia_: 1e4i A: [59225]
    complexed with g2f, nfg
4. Domains for 1tr1:
  1. Domain d1tr1a_: 1tr1 A: [28957]
    complexed with gol
  2. Domain d1tr1b_: 1tr1 B: [28958]
    complexed with gol
  3. Domain d1tr1c_: 1tr1 C: [28959]
    complexed with gol
  4. Domain d1tr1d_: 1tr1 D: [28960]
    complexed with gol
5. Domain for 1uyq:
  - Domain d1uyqa1: 1uyq A:2-448 [119769]
    complexed with g2f, nfg
Clostridium cellulovorans [TaxId:1493] [189410] (1 PDB entry)
- Domains for 3ahx:
  1. Domain d3ahxa_: 3ahx A: [172183]
    automated match to d1od0a_
    complexed with 7pe
  2. Domain d3ahxb_: 3ahx B: [172184]
    automated match to d1od0a_
    complexed with 7pe
  3. Domain d3ahxc_: 3ahx C: [172185]
    automated match to d1od0a_
    complexed with 7pe
  4. Domain d3ahxd_: 3ahx D: [172186]
    automated match to d1od0a_
    complexed with 7pe
Pyrococcus horikoshii [TaxId:53953] [141785] (1 PDB entry)
Uniprot O58104 1-423
- Domain for 1vff:
  - Domain d1vffa1: 1vff A:1-423 [120033]
Streptomyces sp. [TaxId:1931] [82248] (2 PDB entries)
1. Domains for 1gnx:
  1. Domain d1gnxa_: 1gnx A: [76241]
    complexed with so4, suc
  2. Domain d1gnxb_: 1gnx B: [76242]
    complexed with so4, suc
2. Domains for 1gon:
  1. Domain d1gona_: 1gon A: [76249]
    complexed with hg, so4
  2. Domain d1gonb_: 1gon B: [76250]
    complexed with hg, so4
Thermotoga maritima [TaxId:2336] [89475] (8 PDB entries)
Uniprot Q08638
1. Domains for 1od0:
  1. Domain d1od0a_: 1od0 A: [86818]
    Other proteins in same PDB: d1od0b2
  2. Domain d1od0b1: 1od0 B:2-445 [86819]
    Other proteins in same PDB: d1od0b2
2. Domains for 1oif:
  1. Domain d1oifa_: 1oif A: [93049]
    complexed with ifm
  2. Domain d1oifb_: 1oif B: [93050]
    complexed with ifm
3. Domains for 1oim:
  1. Domain d1oima_: 1oim A: [93065]
    Other proteins in same PDB: d1oimb2
    complexed with noj
  2. Domain d1oimb1: 1oim B:2-446 [93066]
    Other proteins in same PDB: d1oimb2
    complexed with noj
4. Domains for 1oin:
  1. Domain d1oina_: 1oin A: [93067]
    complexed with g2f
  2. Domain d1oinb_: 1oin B: [93068]
    complexed with g2f
5. Domains for 1uz1:
  1. Domain d1uz1a_: 1uz1 A: [113456]
    complexed with ifl
  2. Domain d1uz1b_: 1uz1 B: [113457]
    complexed with ifl
6. Domains for 1w3j:
  1. Domain d1w3ja_: 1w3j A: [109156]
    complexed with oxz
  2. Domain d1w3jb_: 1w3j B: [109157]
    complexed with oxz
7. Domains for 5n6s:
  1. Domain d5n6sa_: 5n6s A: [330431]
    automated match to d1oifa_
    complexed with 8p5, act, cl, edo, imd, peg, pge
  2. Domain d5n6sb_: 5n6s B: [330443]
    automated match to d1oifa_
    complexed with 8p5, act, cl, edo, imd, peg, pge
  3. Domain d5n6sc_: 5n6s C: [330422]
    automated match to d1oifa_
    complexed with 8p5, act, cl, edo, imd, peg, pge
  4. Domain d5n6sd_: 5n6s D: [330440]
    automated match to d1oifa_
    complexed with 8p5, act, cl, edo, imd, peg, pge
8. Domains for 5n6t:
  1. Domain d5n6ta_: 5n6t A: [330506]
    Other proteins in same PDB: d5n6tb2
    automated match to d1oifa_
    complexed with 8p2, cl, edo
  2. Domain d5n6tb1: 5n6t B:2-445 [330448]
    Other proteins in same PDB: d5n6tb2
    automated match to d1oifb_
    complexed with 8p2, cl, edo
Thermus nonproteolyticus [TaxId:116039] [89477] (1 PDB entry)
- Domains for 1np2:
  1. Domain d1np2a_: 1np2 A: [85944]
  2. Domain d1np2b_: 1np2 B: [85945]
Thermus thermophilus [TaxId:274] [89476] (2 PDB entries)
1. Domain for 1uah:
  - Domain d1uaha_: 1uah A: [303137]
    automated match to d1ug6a_
    complexed with gol
2. Domain for 1ug6:
  - Domain d1ug6a_: 1ug6 A: [88490]
    complexed with gol
Uncultured bacterium [TaxId:77133] [188736] (6 PDB entries)
1. Domain for 3fiy:
  - Domain d3fiya_: 3fiy A: [305386]
    automated match to d1od0b_
    complexed with na
2. Domain for 3fiz:
  - Domain d3fiza_: 3fiz A: [305387]
    automated match to d1od0b_
    complexed with bgc, na
3. Domain for 3fj0:
  - Domain d3fj0a_: 3fj0 A: [305388]
    automated match to d1od0b_
    complexed with bgc, na
4. Domain for 4hz6:
  - Domain d4hz6a_: 4hz6 A: [194206]
    automated match to d3fiya_
    complexed with gol
5. Domain for 4hz7:
  - Domain d4hz7a_: 4hz7 A: [194207]
    automated match to d3fiya_
    complexed with bgc
6. Domain for 4hz8:
  - Domain d4hz8a_: 4hz8 A: [194208]
    automated match to d3fiya_
    complexed with bgc

More info for Protein Beta-glucosidase A from c.1.8.4: Family 1 of glycosyl hydrolase

Timeline for Protein Beta-glucosidase A from c.1.8.4: Family 1 of glycosyl hydrolase:

Protein Beta-glucosidase A from c.1.8.4: Family 1 of glycosyl hydrolase first appeared (with stable ids) in SCOP 1.55
Protein Beta-glucosidase A from c.1.8.4: Family 1 of glycosyl hydrolase appears in SCOPe 2.05
Protein Beta-glucosidase A from c.1.8.4: Family 1 of glycosyl hydrolase appears in SCOPe 2.07
Protein Beta-glucosidase A from c.1.8.4: Family 1 of glycosyl hydrolase appears in the current release, SCOPe 2.08