SCOPe 2.05: Protein: Xylanase A, catalytic core

Lineage for Protein: Xylanase A, catalytic core

Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)
Family c.1.8.3: beta-glycanases [51487] (27 proteins)
consist of a number of sequence families
Protein Xylanase A, catalytic core [51514] (8 species)

Species:

Cellulomonas fimi [TaxId:1708] [51520] (14 PDB entries)
synonym: beta-1,4-glycanase Cex
1. Domain for 1exp:
  - Domain d1expa_: 1exp A: [28911]
2. Domain for 1fh7:
  - Domain d1fh7a_: 1fh7 A: [28914]
3. Domain for 1fh8:
  - Domain d1fh8a_: 1fh8 A: [28916]
4. Domain for 1fh9:
  - Domain d1fh9a_: 1fh9 A: [28913]
5. Domain for 1fhd:
  - Domain d1fhda_: 1fhd A: [28915]
6. Domain for 1j01:
  - Domain d1j01a_: 1j01 A: [77020]
    complexed with xil
7. Domain for 2exo:
  - Domain d2exoa_: 2exo A: [28912]
8. Domain for 2his:
  - Domain d2hisa_: 2his A: [28918]
    mutant
9. Domain for 2xyl:
  - Domain d2xyla_: 2xyl A: [28917]
10. Domain for 3cuf:
  - Domain d3cufa_: 3cuf A: [173467]
    automated match to d1expa_
    complexed with 9mr
11. Domain for 3cug:
  - Domain d3cuga_: 3cug A: [173468]
    automated match to d1expa_
    complexed with g3i
12. Domain for 3cuh:
  - Domain d3cuha_: 3cuh A: [173469]
    automated match to d1expa_
    complexed with g2i
13. Domain for 3cui:
  - Domain d3cuia_: 3cui A: [173470]
    automated match to d1expa_
    complexed with x4s
14. Domain for 3cuj:
  - Domain d3cuja_: 3cuj A: [173471]
    automated match to d1expa_
    complexed with x5s
Emericella nidulans (Aspergillus nidulans) [TaxId:162425] [110350] (1 PDB entry)
Uniprot Q00177
- Domain for 1ta3:
  - Domain d1ta3b_: 1ta3 B: [106732]
    Other proteins in same PDB: d1ta3a_
    complexed with edo, nag
Fungus (Penicillium simplicissimum) [TaxId:69488] [51516] (7 PDB entries)
1. Domain for 1b30:
  - Domain d1b30a_: 1b30 A: [28895]
2. Domain for 1b31:
  - Domain d1b31a_: 1b31 A: [28892]
3. Domain for 1b3v:
  - Domain d1b3va_: 1b3v A: [28897]
    complexed with xyp, xys
4. Domain for 1b3w:
  - Domain d1b3wa_: 1b3w A: [28898]
    complexed with xyp
5. Domain for 1b3x:
  - Domain d1b3xa_: 1b3x A: [28893]
    complexed with xyp
6. Domain for 1b3y:
  - Domain d1b3ya_: 1b3y A: [28896]
    complexed with xys
7. Domain for 1b3z:
  - Domain d1b3za_: 1b3z A: [28894]
    complexed with xyp
Pseudomonas fluorescens [TaxId:294] [51517] (7 PDB entries)
Uniprot P14768 265-610
1. Domains for 1clx:
  1. Domain d1clxa_: 1clx A: [28899]
    complexed with ca
  2. Domain d1clxb_: 1clx B: [28900]
    complexed with ca
  3. Domain d1clxc_: 1clx C: [28901]
    complexed with ca
  4. Domain d1clxd_: 1clx D: [28902]
    complexed with ca
2. Domains for 1e5n:
  1. Domain d1e5na_: 1e5n A: [28904]
    complexed with ca; mutant
  2. Domain d1e5nb_: 1e5n B: [28905]
    complexed with ca; mutant
3. Domains for 1w2p:
  1. Domain d1w2pa_: 1w2p A: [114102]
    complexed with ca, edo
  2. Domain d1w2pb_: 1w2p B: [114103]
    complexed with ca, edo
4. Domains for 1w2v:
  1. Domain d1w2va_: 1w2v A: [114104]
    complexed with ca, edo; mutant
  2. Domain d1w2vb_: 1w2v B: [114105]
    complexed with ca, edo; mutant
5. Domains for 1w32:
  1. Domain d1w32a_: 1w32 A: [114120]
    complexed with ca, edo; mutant
  2. Domain d1w32b_: 1w32 B: [114121]
    complexed with ca, edo; mutant
6. Domains for 1w3h:
  1. Domain d1w3ha_: 1w3h A: [114140]
    complexed with ca, edo; mutant
  2. Domain d1w3hb_: 1w3h B: [114141]
    complexed with ca, edo; mutant
7. Domains for 1xys:
  1. Domain d1xysa_: 1xys A: [28903]
    CASP1
    complexed with ca; mutant
  2. Domain d1xysb_: 1xys B: [118633]
    duplicate of 1XYS
    complexed with ca; mutant
Streptomyces halstedii [TaxId:1944] [102070] (1 PDB entry)
- Domain for 1nq6:
  - Domain d1nq6a_: 1nq6 A: [92046]
    complexed with mg
Streptomyces lividans [TaxId:1916] [51515] (9 PDB entries)
Uniprot P26514 43-344
1. Domain for 1e0v:
  - Domain d1e0va_: 1e0v A: [59149]
    complexed with ffc
2. Domain for 1e0w:
  - Domain d1e0wa_: 1e0w A: [59150]
3. Domains for 1e0x:
  1. Domain d1e0xa_: 1e0x A: [59151]
    complexed with gol
  2. Domain d1e0xb_: 1e0x B: [59152]
    complexed with gol
4. Domain for 1od8:
  - Domain d1od8a_: 1od8 A: [86838]
    complexed with imd, na, xdl, xyp
5. Domain for 1v0k:
  - Domain d1v0ka_: 1v0k A: [108206]
6. Domain for 1v0l:
  - Domain d1v0la_: 1v0l A: [108207]
7. Domain for 1v0m:
  - Domain d1v0ma_: 1v0m A: [108208]
    complexed with imd
8. Domain for 1v0n:
  - Domain d1v0na_: 1v0n A: [108209]
    complexed with edo, imd
9. Domain for 1xas:
  - Domain d1xasa_: 1xas A: [28891]
    CA-atoms only
Streptomyces olivaceoviridis [TaxId:1921] [51519] (12 PDB entries)
Uniprot Q7SI98
N-terminal domain; fused with a ricin A-like beta-trefoil domain
1. Domains for 1isv:
  1. Domain d1isva2: 1isv A:1-303 [66342]
    Other proteins in same PDB: d1isva1, d1isvb1
    complexed with xyp
  2. Domain d1isvb2: 1isv B:501-803 [66344]
    Other proteins in same PDB: d1isva1, d1isvb1
    complexed with xyp
2. Domains for 1isw:
  1. Domain d1iswa2: 1isw A:1-303 [66346]
    Other proteins in same PDB: d1iswa1, d1iswb1
    complexed with xyp
  2. Domain d1iswb2: 1isw B:501-803 [66348]
    Other proteins in same PDB: d1iswa1, d1iswb1
    complexed with xyp
3. Domains for 1isx:
  1. Domain d1isxa2: 1isx A:1-303 [66350]
    Other proteins in same PDB: d1isxa1, d1isxb1
    complexed with xyp
  2. Domain d1isxb2: 1isx B:501-803 [66352]
    Other proteins in same PDB: d1isxa1, d1isxb1
    complexed with xyp
4. Domains for 1isy:
  1. Domain d1isya2: 1isy A:1-303 [66354]
    Other proteins in same PDB: d1isya1, d1isyb1
    complexed with bgc
  2. Domain d1isyb2: 1isy B:501-803 [66356]
    Other proteins in same PDB: d1isya1, d1isyb1
    complexed with bgc
5. Domains for 1isz:
  1. Domain d1isza2: 1isz A:1-303 [66358]
    Other proteins in same PDB: d1isza1, d1iszb1
    complexed with gal
  2. Domain d1iszb2: 1isz B:501-803 [66360]
    Other proteins in same PDB: d1isza1, d1iszb1
    complexed with gal
6. Domains for 1it0:
  1. Domain d1it0a2: 1it0 A:1-303 [66362]
    Other proteins in same PDB: d1it0a1, d1it0b1
    complexed with lat
  2. Domain d1it0b2: 1it0 B:501-803 [66364]
    Other proteins in same PDB: d1it0a1, d1it0b1
    complexed with lat
7. Domains for 1v6u:
  1. Domain d1v6ua2: 1v6u A:1-303 [100427]
    Other proteins in same PDB: d1v6ua1, d1v6ub1
    complexed with xyp, xys
  2. Domain d1v6ub2: 1v6u B:501-803 [100429]
    Other proteins in same PDB: d1v6ua1, d1v6ub1
    complexed with xyp, xys
8. Domains for 1v6v:
  1. Domain d1v6va2: 1v6v A:1-303 [100431]
    Other proteins in same PDB: d1v6va1, d1v6vb1
    complexed with xyp
  2. Domain d1v6vb2: 1v6v B:501-803 [100433]
    Other proteins in same PDB: d1v6va1, d1v6vb1
    complexed with xyp
9. Domains for 1v6w:
  1. Domain d1v6wa2: 1v6w A:1-303 [100435]
    Other proteins in same PDB: d1v6wa1, d1v6wb1
    complexed with xyp
  2. Domain d1v6wb2: 1v6w B:501-803 [100437]
    Other proteins in same PDB: d1v6wa1, d1v6wb1
    complexed with xyp
10. Domains for 1v6x:
  1. Domain d1v6xa2: 1v6x A:1-303 [100439]
    Other proteins in same PDB: d1v6xa1, d1v6xb1
    complexed with xyp
  2. Domain d1v6xb2: 1v6x B:501-803 [100441]
    Other proteins in same PDB: d1v6xa1, d1v6xb1
    complexed with xyp
11. Domain for 1v6y:
  - Domain d1v6ya_: 1v6y A: [108401]
    Artificial chimera
12. Domains for 1xyf:
  1. Domain d1xyfa2: 1xyf A:1-303 [28909]
    Other proteins in same PDB: d1xyfa1, d1xyfb1
  2. Domain d1xyfb2: 1xyf B:501-803 [28910]
    Other proteins in same PDB: d1xyfa1, d1xyfb1
Thermoascus aurantiacus [TaxId:5087] [51518] (10 PDB entries)
1. Domain for 1gok:
  - Domain d1goka_: 1gok A: [65420]
2. Domain for 1gom:
  - Domain d1goma_: 1gom A: [65421]
3. Domain for 1goo:
  - Domain d1gooa_: 1goo A: [65422]
    complexed with gol
4. Domain for 1goq:
  - Domain d1goqa_: 1goq A: [65423]
    complexed with xyp
5. Domain for 1gor:
  - Domain d1gora_: 1gor A: [65424]
6. Domain for 1i1w:
  - Domain d1i1wa_: 1i1w A: [76732]
    ultra high resolution structure
    complexed with acn, eoh, gol, unx
7. Domain for 1i1x:
  - Domain d1i1xa_: 1i1x A: [76733]
8. Domain for 1k6a:
  - Domain d1k6aa_: 1k6a A: [72081]
9. Domain for 1tux:
  - Domain d1tuxa_: 1tux A: [28907]
    X-ray determined sequence differs from that in other entries
10. Domain for 2bnj:
  - Domain d2bnja1: 2bnj A:1-302 [128832]
    complexed with fer

More info for Protein Xylanase A, catalytic core from c.1.8.3: beta-glycanases

Timeline for Protein Xylanase A, catalytic core from c.1.8.3: beta-glycanases:

Protein Xylanase A, catalytic core from c.1.8.3: beta-glycanases first appeared (with stable ids) in SCOP 1.55
Protein Xylanase A, catalytic core from c.1.8.3: beta-glycanases appears in SCOPe 2.04
Protein Xylanase A, catalytic core from c.1.8.3: beta-glycanases appears in SCOPe 2.06
Protein Xylanase A, catalytic core from c.1.8.3: beta-glycanases appears in the current release, SCOPe 2.08