Lineage for Family c.1.8.3: beta-glycanases

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1815292Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1818156Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 1818795Family c.1.8.3: beta-glycanases [51487] (27 proteins)
    consist of a number of sequence families

Proteins:

  1. 1818796Alkaline cellulase K catalytic domain [63906] (1 species)
  2. 1818800Alpha-L-arabinofuranosidase, catalytic domain [102075] (2 species)
    glycosyl hydrolase family 51
    1. 1818801Species Bacillus stearothermophilus [TaxId:1422] [102076] (4 PDB entries)
    2. 1818810Species Clostridium thermocellum [TaxId:1515] [141779] (2 PDB entries)
      Uniprot Q4CJG5 17-386
  3. 1818823Beta-1,4-galactanase [89469] (4 species)
    1. 1818824Species Bacillus licheniformis [TaxId:1402] [117367] (4 PDB entries)
      Uniprot Q65CX5 36-422 ! Uniprot Q65CX5 28-424
    2. 1818832Species Fungus (Aspergillus aculeatus) [TaxId:5053] [89470] (2 PDB entries)
    3. 1818835Species Fungus (Humicola insolens) [TaxId:34413] [89472] (1 PDB entry)
    4. 1818837Species Thielavia heterothallica, aka Myceliophthora thermophila [TaxId:78579] [89471] (2 PDB entries)
      Myceliophthora thermophila is the anamorph name whilst Thielavia heterothallica is the teleomorph name
  4. 1818846Beta-D-xylosidase, catalytic domain [102077] (2 species)
    glycosyl hydrolase family 39
    1. 1818847Species Bacillus stearothermophilus [TaxId:1422] [141780] (3 PDB entries)
      Uniprot Q9ZFM2 15-361
    2. 1818872Species Thermoanaerobacterium saccharolyticum [TaxId:28896] [102078] (2 PDB entries)
  5. 1818879beta-Galactosidase, domain 3 [51510] (2 species)
    1. 1818880Species Arthrobacter sp. c2-2 [TaxId:192168] [141778] (1 PDB entry)
      Uniprot Q8KRF6 313-609
    2. 1818887Species Escherichia coli [TaxId:562] [51511] (42 PDB entries)
      Uniprot P00722
  6. 1819088beta-Glucuronidase, domain 3 [51512] (1 species)
  7. 1819096Beta-mannanase [51502] (4 species)
    1. 1819097Species Bacillus sp. JAMB-602 [TaxId:244966] [141775] (1 PDB entry)
      Uniprot Q4W8M3 34-490
      contains additional C-terminal domain (CBM)
    2. 1819099Species Thermobifida fusca [TaxId:2021] [51503] (3 PDB entries)
    3. 1819103Species Tomato (Lycopersicon esculentum) [TaxId:4081] [141774] (1 PDB entry)
      Uniprot Q93WT4 30-399
    4. 1819105Species Trichoderma reesei [TaxId:51453] [51504] (5 PDB entries)
  8. 1819111endo-1,4-beta-mannosidase [141781] (1 species)
  9. 1819114Endocellulase E1 [51497] (1 species)
  10. 1819120Endocellulase EngI [75066] (1 species)
  11. 1819126Endoglucanase Cel5a [51499] (4 species)
    1. 1819127Species Bacillus agaradhaerens [TaxId:76935] [51500] (19 PDB entries)
      Uniprot O85465 30-329
    2. 1819147Species Bacillus subtilis [TaxId:1423] [75068] (1 PDB entry)
    3. 1819149Species Erwinia chrysanthemi [TaxId:556] [51501] (1 PDB entry)
    4. 1819153Species Pseudoalteromonas haloplanktis [TaxId:228] [141773] (2 PDB entries)
      Uniprot O86099 33-325
  12. 1819158Endoglucanase CelA [51491] (1 species)
  13. 1819161Endoglucanase CelC [51493] (1 species)
  14. 1819166Endoglucanase H N-terminal domain [141783] (1 species)
  15. 1819170Endoglucanase homologue TM1752 [102066] (1 species)
  16. 1819173Exo-beta-(1,3)-glucanase [51495] (2 species)
    1. 1819174Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [102065] (1 PDB entry)
    2. 1819177Species Yeast (Candida albicans) [TaxId:5476] [51496] (4 PDB entries)
  17. 1819182Exochitosanase CsxA [159383] (1 species)
  18. 1819190Exomannosidase [102068] (1 species)
    mannosyl-oligosaccharide glucosidase
  19. 1819194Five-domain beta-mannosidase, domain 3 [159385] (1 species)
  20. 1819200Glucosylceramidase, catalytic domain [89473] (1 species)
    acid-beta-glucosidase; glycosyl hydrolase family 30; contains additional beta-domain similar to one found in alpha amylases
  21. 1819254Glycosyl hydrolase family 5 xylanase, catalytic domain [102073] (1 species)
    overall domain organization is similar to the homologous glucosylceramidase
  22. 1819258Mannanase A, ManA [63908] (2 species)
    1. 1819259Species Cellulomonas fimi [TaxId:1708] [141776] (2 PDB entries)
      Uniprot Q9XCV5 55-420
    2. 1819263Species Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId:155077] [63909] (5 PDB entries)
  23. 1819270Plant beta-glucanases [51507] (3 species)
    1. 1819271Species Banana (Musa acuminata), 1,3-beta-glucanase [TaxId:4641] [141777] (1 PDB entry)
      Uniprot O22317 29-340
    2. 1819273Species Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId:4513] [51509] (2 PDB entries)
    3. 1819277Species Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId:4513] [51508] (1 PDB entry)
  24. 1819280Xylanase [51488] (6 species)
    1. 1819281Species Bacillus stearothermophilus, Ixt6 [TaxId:1422] [102063] (7 PDB entries)
      intra-cellular xylanase
    2. 1819296Species Bacillus stearothermophilus, Xt6 [TaxId:1422] [69386] (8 PDB entries)
      Uniprot P40943
    3. 1819305Species Cellvibrio mixtus [TaxId:39650] [102064] (4 PDB entries)
    4. 1819310Species Clostridium thermocellum, XynZ [TaxId:1515] [51489] (1 PDB entry)
      belongs to family F
    5. 1819313Species Fungus (Penicillium simplicissimum) [TaxId:69488] [51490] (1 PDB entry)
      belongs to family 10
    6. 1819315Species Thermotoga maritima [TaxId:2336] [141772] (1 PDB entry)
      Uniprot Q9WXS5 23-346
  25. 1819317Xylanase 10c [102071] (1 species)
    Endo-beta-1,4-xylanase
  26. 1819321Xylanase A, catalytic core [51514] (8 species)
    1. 1819322Species Cellulomonas fimi [TaxId:1708] [51520] (14 PDB entries)
      synonym: beta-1,4-glycanase Cex
    2. 1819337Species Emericella nidulans (Aspergillus nidulans) [TaxId:162425] [110350] (1 PDB entry)
      Uniprot Q00177
    3. 1819339Species Fungus (Penicillium simplicissimum) [TaxId:69488] [51516] (7 PDB entries)
    4. 1819347Species Pseudomonas fluorescens [TaxId:294] [51517] (7 PDB entries)
      Uniprot P14768 265-610
    5. 1819364Species Streptomyces halstedii [TaxId:1944] [102070] (1 PDB entry)
    6. 1819366Species Streptomyces lividans [TaxId:1916] [51515] (9 PDB entries)
      Uniprot P26514 43-344
    7. 1819377Species Streptomyces olivaceoviridis [TaxId:1921] [51519] (12 PDB entries)
      Uniprot Q7SI98
      N-terminal domain; fused with a ricin A-like beta-trefoil domain
    8. 1819401Species Thermoascus aurantiacus [TaxId:5087] [51518] (10 PDB entries)
  27. 1819412automated matches [190057] (21 species)
    not a true protein
    1. 1819413Species Aspergillus niger [TaxId:5061] [260290] (1 PDB entry)
    2. 1819416Species Bacillus agaradhaerens [TaxId:76935] [187246] (1 PDB entry)
    3. 1819418Species Bacillus halodurans [TaxId:86665] [188453] (1 PDB entry)
    4. 1819420Species Bacillus licheniformis [TaxId:1402] [187025] (3 PDB entries)
    5. 1819426Species Bacillus sp. [TaxId:65673] [187690] (5 PDB entries)
    6. 1819436Species Bacillus sp. [TaxId:89769] [189058] (3 PDB entries)
    7. 1819440Species Bacteroides thetaiotaomicron [TaxId:226186] [255614] (7 PDB entries)
    8. Species Bacteroides thetaiotaomicron [TaxId:818] [255622] (1 PDB entry)
    9. 1819458Species Cellulomonas fimi [TaxId:1708] [231537] (1 PDB entry)
    10. 1819461Species Cellvibrio mixtus [TaxId:39650] [255089] (1 PDB entry)
    11. 1819463Species Clostridium thermocellum [TaxId:1515] [187247] (4 PDB entries)
    12. 1819468Species Emericella nidulans [TaxId:162425] [226738] (1 PDB entry)
    13. 1819470Species Podospora anserina [TaxId:5145] [256160] (1 PDB entry)
    14. 1819472Species Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId:155077] [188920] (1 PDB entry)
    15. 1819474Species Rubber tree (Hevea brasiliensis) [TaxId:3981] [189057] (2 PDB entries)
    16. 1819483Species Soil metagenome [TaxId:410658] [236610] (2 PDB entries)
    17. 1819488Species Streptomyces olivaceoviridis [TaxId:1921] [225150] (8 PDB entries)
    18. 1819503Species Streptomyces thermolilacinus [TaxId:285540] [272999] (2 PDB entries)
    19. 1819508Species Thermoascus aurantiacus [TaxId:5087] [190006] (3 PDB entries)
    20. 1819514Species Thermotoga petrophila [TaxId:390874] [189941] (2 PDB entries)
    21. 1819519Species Yeast (Candida albicans) [TaxId:5476] [188406] (8 PDB entries)

More info for Family c.1.8.3: beta-glycanases

Timeline for Family c.1.8.3: beta-glycanases: