Lineage for Protein: Plant alpha-amylase

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2081496Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2081497Family c.1.8.1: Amylase, catalytic domain [51446] (26 protein domains)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. 2081959Protein Plant alpha-amylase [51474] (2 species)

Species:

  1. 2081960Barley (Hordeum vulgare), AMY1 isozyme [TaxId:4513] [89465] (7 PDB entries)
    1. Domain for 1ht6:
    2. Domain for 1p6w:
    3. Domain for 1rp8:
    4. Domain for 1rp9:
    5. Domain for 1rpk:
    6. Domain for 2qps:
    7. Domains for 2qpu:
      1. 2081962Domain d2qpua2: 2qpu A:1-347 [151210]
        Other proteins in same PDB: d2qpua1, d2qpub1, d2qpuc1
        automatically matched to d1ht6a2
        complexed with bgc, ca, edo, qps, qpu; mutant
      2. 2081963Domain d2qpub2: 2qpu B:1-347 [151212]
        Other proteins in same PDB: d2qpua1, d2qpub1, d2qpuc1
        automatically matched to d1ht6a2
        complexed with bgc, ca, edo, qps, qpu; mutant
      3. 2081964Domain d2qpuc2: 2qpu C:1-347 [151214]
        Other proteins in same PDB: d2qpua1, d2qpub1, d2qpuc1
        automatically matched to d1ht6a2
        complexed with bgc, ca, edo, qps, qpu; mutant
  2. 2081970Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId:4513] [51475] (3 PDB entries)
    1. Domain for 1amy:
    2. Domains for 1ava:
      1. 2081971Domain d1avaa2: 1ava A:1-346 [28784]
        Other proteins in same PDB: d1avaa1, d1avab1, d1avac_, d1avad_
        complexed with ca
      2. 2081972Domain d1avab2: 1ava B:1-346 [28785]
        Other proteins in same PDB: d1avaa1, d1avab1, d1avac_, d1avad_
        complexed with ca
    3. Domain for 1bg9:

More info for Protein Plant alpha-amylase from c.1.8.1: Amylase, catalytic domain

Timeline for Protein Plant alpha-amylase from c.1.8.1: Amylase, catalytic domain: