SCOPe 2.02: Protein: Maltogenic amylase, central domain

Lineage for Protein: Maltogenic amylase, central domain

Root: SCOPe 2.02
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
members of the family may contain various insert subdomains
in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

Protein Maltogenic amylase, central domain [51465] (4 species)
contains an additional N-terminal domain

Species:

Bacillus sp., cyclomaltodextrinase [TaxId:1409] [75060] (1 PDB entry)
- Domains for 1ea9:
  1. Domain d1ea9c3: 1ea9 C:122-503 [70089]
    Other proteins in same PDB: d1ea9c1, d1ea9c2, d1ea9d1, d1ea9d2
  2. Domain d1ea9d3: 1ea9 D:122-503 [70092]
    Other proteins in same PDB: d1ea9c1, d1ea9c2, d1ea9d1, d1ea9d2
Thermoactinomyces vulgaris, TVAI [TaxId:2026] [75061] (9 PDB entries)
1. Domain for 1izj:
  - Domain d1izja3: 1izj A:123-554 [83843]
    Other proteins in same PDB: d1izja1, d1izja2
    complexed with ca; mutant
2. Domain for 1izk:
  - Domain d1izka3: 1izk A:123-554 [83846]
    Other proteins in same PDB: d1izka1, d1izka2
    complexed with ca; mutant
3. Domains for 1ji1:
  1. Domain d1ji1a3: 1ji1 A:123-554 [71668]
    Other proteins in same PDB: d1ji1a1, d1ji1a2, d1ji1b1, d1ji1b2
    complexed with ca
  2. Domain d1ji1b3: 1ji1 B:123-554 [71671]
    Other proteins in same PDB: d1ji1a1, d1ji1a2, d1ji1b1, d1ji1b2
    complexed with ca
4. Domain for 1uh2:
  - Domain d1uh2a3: 1uh2 A:123-554 [99387]
    Other proteins in same PDB: d1uh2a1, d1uh2a2
    complexed with ca
5. Domain for 1uh3:
  - Domain d1uh3a3: 1uh3 A:123-554 [99390]
    Other proteins in same PDB: d1uh3a1, d1uh3a2
    complexed with aci, ca, hsd
6. Domain for 1uh4:
  - Domain d1uh4a3: 1uh4 A:123-554 [99393]
    Other proteins in same PDB: d1uh4a1, d1uh4a2
    complexed with ca, glc, mpd
7. Domain for 2d0f:
  - Domain d2d0fa3: 2d0f A:123-554 [131066]
    Other proteins in same PDB: d2d0fa1, d2d0fa2
    automatically matched to d1izja3
    complexed with ca, mpd; mutant
8. Domain for 2d0g:
  - Domain d2d0ga3: 2d0g A:123-554 [131069]
    Other proteins in same PDB: d2d0ga1, d2d0ga2
    automatically matched to d1izja3
    complexed with bgc, ca, glc, mpd; mutant
9. Domain for 2d0h:
  - Domain d2d0ha3: 2d0h A:123-554 [131072]
    Other proteins in same PDB: d2d0ha1, d2d0ha2
    automatically matched to d1izja3
    complexed with ca, mpd; mutant
Thermoactinomyces vulgaris, TVAII [TaxId:2026] [51467] (16 PDB entries)
1. Domains for 1bvz:
  1. Domain d1bvza3: 1bvz A:121-502 [28770]
    Other proteins in same PDB: d1bvza1, d1bvza2, d1bvzb1, d1bvzb2
  2. Domain d1bvzb3: 1bvz B:121-502 [28771]
    Other proteins in same PDB: d1bvza1, d1bvza2, d1bvzb1, d1bvzb2
2. Domains for 1g1y:
  1. Domain d1g1ya3: 1g1y A:121-502 [60212]
    Other proteins in same PDB: d1g1ya1, d1g1ya2, d1g1yb1, d1g1yb2
    complexed with bcd
  2. Domain d1g1yb3: 1g1y B:121-502 [60215]
    Other proteins in same PDB: d1g1ya1, d1g1ya2, d1g1yb1, d1g1yb2
    complexed with bcd
3. Domains for 1jf5:
  1. Domain d1jf5a3: 1jf5 A:121-502 [71646]
    Other proteins in same PDB: d1jf5a1, d1jf5a2, d1jf5b1, d1jf5b2
    complexed with ca; mutant
  2. Domain d1jf5b3: 1jf5 B:121-502 [71649]
    Other proteins in same PDB: d1jf5a1, d1jf5a2, d1jf5b1, d1jf5b2
    complexed with ca; mutant
4. Domains for 1jf6:
  1. Domain d1jf6a3: 1jf6 A:121-502 [71652]
    Other proteins in same PDB: d1jf6a1, d1jf6a2, d1jf6b1, d1jf6b2
    complexed with ca; mutant
  2. Domain d1jf6b3: 1jf6 B:121-502 [71655]
    Other proteins in same PDB: d1jf6a1, d1jf6a2, d1jf6b1, d1jf6b2
    complexed with ca; mutant
5. Domains for 1ji2:
  1. Domain d1ji2a3: 1ji2 A:121-502 [71674]
    Other proteins in same PDB: d1ji2a1, d1ji2a2, d1ji2b1, d1ji2b2
    complexed with ca
  2. Domain d1ji2b3: 1ji2 B:121-502 [71677]
    Other proteins in same PDB: d1ji2a1, d1ji2a2, d1ji2b1, d1ji2b2
    complexed with ca
6. Domains for 1jib:
  1. Domain d1jiba3: 1jib A:121-502 [63071]
    Other proteins in same PDB: d1jiba1, d1jiba2, d1jibb1, d1jibb2
    complexed with mtt
  2. Domain d1jibb3: 1jib B:121-502 [63074]
    Other proteins in same PDB: d1jiba1, d1jiba2, d1jibb1, d1jibb2
    complexed with mtt
7. Domains for 1jl8:
  1. Domain d1jl8a3: 1jl8 A:121-502 [63165]
    Other proteins in same PDB: d1jl8a1, d1jl8a2, d1jl8b1, d1jl8b2
    complexed with bcd
  2. Domain d1jl8b3: 1jl8 B:121-502 [63168]
    Other proteins in same PDB: d1jl8a1, d1jl8a2, d1jl8b1, d1jl8b2
    complexed with bcd
8. Domains for 1vb9:
  1. Domain d1vb9a3: 1vb9 A:121-502 [119947]
    Other proteins in same PDB: d1vb9a1, d1vb9a2, d1vb9b1, d1vb9b2
    automatically matched to d1bvza3
    complexed with ca
  2. Domain d1vb9b3: 1vb9 B:121-502 [119950]
    Other proteins in same PDB: d1vb9a1, d1vb9a2, d1vb9b1, d1vb9b2
    automatically matched to d1bvza3
    complexed with ca
9. Domains for 1vfm:
  1. Domain d1vfma3: 1vfm A:121-502 [120044]
    Other proteins in same PDB: d1vfma1, d1vfma2, d1vfmb1, d1vfmb2
    automatically matched to d1bvza3
    complexed with ca
  2. Domain d1vfmb3: 1vfm B:121-502 [120047]
    Other proteins in same PDB: d1vfma1, d1vfma2, d1vfmb1, d1vfmb2
    automatically matched to d1bvza3
    complexed with ca
10. Domains for 1vfo:
  1. Domain d1vfoa3: 1vfo A:121-502 [120050]
    Other proteins in same PDB: d1vfoa1, d1vfoa2, d1vfob1, d1vfob2
    automatically matched to d1bvza3
    complexed with ca
  2. Domain d1vfob3: 1vfo B:121-502 [120053]
    Other proteins in same PDB: d1vfoa1, d1vfoa2, d1vfob1, d1vfob2
    automatically matched to d1bvza3
    complexed with ca
11. Domains for 1vfu:
  1. Domain d1vfua3: 1vfu A:121-502 [120057]
    Other proteins in same PDB: d1vfua1, d1vfua2, d1vfub1, d1vfub2
    automatically matched to d1bvza3
    complexed with ca
  2. Domain d1vfub3: 1vfu B:121-502 [120060]
    Other proteins in same PDB: d1vfua1, d1vfua2, d1vfub1, d1vfub2
    automatically matched to d1bvza3
    complexed with ca
12. Domains for 1wzk:
  1. Domain d1wzka3: 1wzk A:121-502 [121509]
    Other proteins in same PDB: d1wzka1, d1wzka2, d1wzkb1, d1wzkb2
    automatically matched to d1bvza3
    complexed with ca
  2. Domain d1wzkb3: 1wzk B:121-502 [121512]
    Other proteins in same PDB: d1wzka1, d1wzka2, d1wzkb1, d1wzkb2
    automatically matched to d1bvza3
    complexed with ca
13. Domains for 1wzl:
  1. Domain d1wzla3: 1wzl A:121-502 [121515]
    Other proteins in same PDB: d1wzla1, d1wzla2, d1wzlb1, d1wzlb2
    automatically matched to d1bvza3
    complexed with ca
  2. Domain d1wzlb3: 1wzl B:121-502 [121518]
    Other proteins in same PDB: d1wzla1, d1wzla2, d1wzlb1, d1wzlb2
    automatically matched to d1bvza3
    complexed with ca
14. Domains for 1wzm:
  1. Domain d1wzma3: 1wzm A:121-502 [121521]
    Other proteins in same PDB: d1wzma1, d1wzma2, d1wzmb1, d1wzmb2
    automatically matched to d1bvza3
    complexed with ca
  2. Domain d1wzmb3: 1wzm B:121-502 [121524]
    Other proteins in same PDB: d1wzma1, d1wzma2, d1wzmb1, d1wzmb2
    automatically matched to d1bvza3
    complexed with ca
15. Domains for 2d2o:
  1. Domain d2d2oa3: 2d2o A:121-502 [131178]
    Other proteins in same PDB: d2d2oa1, d2d2oa2, d2d2ob1, d2d2ob2
    automatically matched to d1bvza3
    complexed with ca
  2. Domain d2d2ob3: 2d2o B:121-502 [131181]
    Other proteins in same PDB: d2d2oa1, d2d2oa2, d2d2ob1, d2d2ob2
    automatically matched to d1bvza3
    complexed with ca
16. Domains for 3a6o:
  1. Domain d3a6oa3: 3a6o A:121-502 [171823]
    Other proteins in same PDB: d3a6oa1, d3a6oa2, d3a6ob1, d3a6ob2
    automatically matched to d1bvza3
    complexed with are, ca
  2. Domain d3a6ob3: 3a6o B:121-502 [171826]
    Other proteins in same PDB: d3a6oa1, d3a6oa2, d3a6ob1, d3a6ob2
    automatically matched to d1bvza3
    complexed with are, ca
Thermus sp. [TaxId:275] [51466] (2 PDB entries)
1. Domains for 1gvi:
  1. Domain d1gvia3: 1gvi A:124-505 [70606]
    Other proteins in same PDB: d1gvia1, d1gvia2, d1gvib1, d1gvib2
    complexed with bcd
  2. Domain d1gvib3: 1gvi B:124-505 [70609]
    Other proteins in same PDB: d1gvia1, d1gvia2, d1gvib1, d1gvib2
    complexed with bcd
2. Domains for 1sma:
  1. Domain d1smaa3: 1sma A:124-505 [28768]
    Other proteins in same PDB: d1smaa1, d1smaa2, d1smab1, d1smab2
  2. Domain d1smab3: 1sma B:124-505 [28769]
    Other proteins in same PDB: d1smaa1, d1smaa2, d1smab1, d1smab2

More info for Protein Maltogenic amylase, central domain from c.1.8.1: Amylase, catalytic domain

Timeline for Protein Maltogenic amylase, central domain from c.1.8.1: Amylase, catalytic domain:

Protein Maltogenic amylase, central domain from c.1.8.1: Amylase, catalytic domain first appeared (with stable ids) in SCOP 1.55, called Protein Maltogenic amylase, central domain from c.1.8.1: alpha-Amylases, N-terminal domain
Protein Maltogenic amylase, central domain from c.1.8.1: Amylase, catalytic domain appears in SCOPe 2.01
Protein Maltogenic amylase, central domain from c.1.8.1: Amylase, catalytic domain appears in SCOPe 2.03
Protein Maltogenic amylase, central domain from c.1.8.1: Amylase, catalytic domain appears in the current release, SCOPe 2.08