SCOP 1.65: Protein: Animal alpha-amylase

Lineage for Protein: Animal alpha-amylase

Root: SCOP 1.65
Class c: Alpha and beta proteins (a/b) [51349] (121 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (26 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (9 families)

Family c.1.8.1: Amylase, catalytic domain [51446] (22 proteins)
members of the family may contain various insert subdomains
in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

Protein Animal alpha-amylase [51458] (3 species)
contains Ca2+-binding subdomain, residues 100-170

Species:

Human (Homo sapiens) [TaxId:9606] [51460] (18 PDB entries)
1. Domain for 1b2y:
  - Domain d1b2ya2: 1b2y A:2-403 [28759]
    Other proteins in same PDB: d1b2ya1
2. Domain for 1bsi:
  - Domain d1bsi_2: 1bsi 1-403 [28757]
    Other proteins in same PDB: d1bsi_1
    complexed with ca, cl, nag
3. Domain for 1c8q:
  - Domain d1c8qa2: 1c8q A:1-403 [59088]
    Other proteins in same PDB: d1c8qa1
    complexed with ca, cl
4. Domain for 1cpu:
  - Domain d1cpua2: 1cpu A:1-403 [28758]
    Other proteins in same PDB: d1cpua1
    complexed with agl, ca, cl, glc, hmc, nag
5. Domain for 1hny:
  - Domain d1hny_2: 1hny 1-403 [28756]
    Other proteins in same PDB: d1hny_1
    complexed with ca, cl
6. Domain for 1jxj:
  - Domain d1jxja2: 1jxj A:1-403 [63315]
    Other proteins in same PDB: d1jxja1
    complexed with ca, cl; mutant
7. Domain for 1jxk:
  - Domain d1jxka2: 1jxk A:1-403 [63317]
    Other proteins in same PDB: d1jxka1
    complexed with ca, cl
8. Domain for 1kb3:
  - Domain d1kb3a2: 1kb3 A:1-403 [72270]
    Other proteins in same PDB: d1kb3a1
    complexed with ca, nag, pca; mutant
9. Domain for 1kbb:
  - Domain d1kbba2: 1kbb A:1-403 [72276]
    Other proteins in same PDB: d1kbba1
    complexed with ca, cl, pca; mutant
10. Domain for 1kbk:
  - Domain d1kbka2: 1kbk A:1-403 [72283]
    Other proteins in same PDB: d1kbka1
    complexed with ca, cl, nag, pca; mutant
11. Domain for 1kgu:
  - Domain d1kgua2: 1kgu A:1-403 [68599]
    Other proteins in same PDB: d1kgua1
    complexed with ca; mutant
12. Domain for 1kgw:
  - Domain d1kgwa2: 1kgw A:1-403 [68601]
    Other proteins in same PDB: d1kgwa1
    complexed with ca, nag; mutant
13. Domain for 1kgx:
  - Domain d1kgxa2: 1kgx A:1-403 [68603]
    Other proteins in same PDB: d1kgxa1
    complexed with ca, nag; mutant
14. Domain for 1mfu:
  - Domain d1mfua2: 1mfu A:1-403 [79048]
    Other proteins in same PDB: d1mfua1
    complexed with agl, ca, cl, glc, hmc, pca; mutant
15. Domain for 1mfv:
  - Domain d1mfva2: 1mfv A:1-403 [79050]
    Other proteins in same PDB: d1mfva1
    complexed with agl, ca, cl, glc, hmc, pca
16. Domain for 1smd:
  - Domain d1smd_2: 1smd 1-403 [28755]
    Other proteins in same PDB: d1smd_1
    complexed with ca, cl
17. Domain for 2cpu:
  - Domain d2cpua2: 2cpu A:1-403 [63335]
    Other proteins in same PDB: d2cpua1
    complexed with ca, cl; mutant
18. Domain for 3cpu:
  - Domain d3cpua2: 3cpu A:1-403 [63337]
    Other proteins in same PDB: d3cpua1
    complexed with ca, cl, glc; mutant
Pig (Sus scrofa) [TaxId:9823] [51459] (11 PDB entries)
1. Domain for 1bvn:
  - Domain d1bvnp2: 1bvn P:1-403 [28754]
    Other proteins in same PDB: d1bvnp1, d1bvnt_
    complexed with ca, cl
2. Domain for 1dhk:
  - Domain d1dhka2: 1dhk A:1-403 [28748]
    Other proteins in same PDB: d1dhka1, d1dhkb_
    complexed with ca, cl, nag
3. Domain for 1hx0:
  - Domain d1hx0a2: 1hx0 A:1-403 [61347]
    Other proteins in same PDB: d1hx0a1
    complexed with ac1, ca, cl, egl, glb, glc, mal
4. Domain for 1jfh:
  - Domain d1jfh_2: 1jfh 1-403 [28749]
    Other proteins in same PDB: d1jfh_1
    complexed with ca, cl, hg, ma1, ma2, ma3, man
5. Domains for 1kxq:
  1. Domain d1kxqa2: 1kxq A:1-403 [73164]
    Other proteins in same PDB: d1kxqa1, d1kxqb1, d1kxqc1, d1kxqd1, d1kxqe_, d1kxqf_, d1kxqg_, d1kxqh_
  2. Domain d1kxqb2: 1kxq B:1-403 [73166]
    Other proteins in same PDB: d1kxqa1, d1kxqb1, d1kxqc1, d1kxqd1, d1kxqe_, d1kxqf_, d1kxqg_, d1kxqh_
  3. Domain d1kxqc2: 1kxq C:1-403 [73168]
    Other proteins in same PDB: d1kxqa1, d1kxqb1, d1kxqc1, d1kxqd1, d1kxqe_, d1kxqf_, d1kxqg_, d1kxqh_
  4. Domain d1kxqd2: 1kxq D:1-403 [73170]
    Other proteins in same PDB: d1kxqa1, d1kxqb1, d1kxqc1, d1kxqd1, d1kxqe_, d1kxqf_, d1kxqg_, d1kxqh_
    complexed with ca, cl
6. Domains for 1kxt:
  1. Domain d1kxta2: 1kxt A:1-403 [73178]
    Other proteins in same PDB: d1kxta1, d1kxtb_, d1kxtc1, d1kxtd_, d1kxte1, d1kxtf_
  2. Domain d1kxtc2: 1kxt C:1-403 [73181]
    Other proteins in same PDB: d1kxta1, d1kxtb_, d1kxtc1, d1kxtd_, d1kxte1, d1kxtf_
  3. Domain d1kxte2: 1kxt E:1-403 [73184]
    Other proteins in same PDB: d1kxta1, d1kxtb_, d1kxtc1, d1kxtd_, d1kxte1, d1kxtf_
    complexed with ca, cl
7. Domains for 1kxv:
  1. Domain d1kxva2: 1kxv A:1-403 [73187]
    Other proteins in same PDB: d1kxva1, d1kxvb1, d1kxvc_, d1kxvd_
  2. Domain d1kxvb2: 1kxv B:1-403 [73189]
    Other proteins in same PDB: d1kxva1, d1kxvb1, d1kxvc_, d1kxvd_
8. Domain for 1ose:
  - Domain d1ose_2: 1ose 1-403 [28753]
    Other proteins in same PDB: d1ose_1
    complexed with acr, ca, cl, glc
9. Domain for 1pif:
  - Domain d1pif_2: 1pif 1-403 [28752]
    Other proteins in same PDB: d1pif_1
    complexed with ca, cl
10. Domain for 1pig:
  - Domain d1pig_2: 1pig 1-403 [28751]
    Other proteins in same PDB: d1pig_1
    complexed with agl, ca, cl, glc, hmc
11. Domain for 1ppi:
  - Domain d1ppi_2: 1ppi 1-403 [28750]
    Other proteins in same PDB: d1ppi_1
    complexed with ca, cl, daf, glc
Yellow mealworm (Tenebrio molitor), larva [TaxId:7067] [51461] (4 PDB entries)
1. Domain for 1clv:
  - Domain d1clva2: 1clv A:1-378 [28761]
    Other proteins in same PDB: d1clva1, d1clvi_
    complexed with ca, cl
2. Domain for 1jae:
  - Domain d1jae_2: 1jae 1-378 [28760]
    Other proteins in same PDB: d1jae_1
    complexed with ca, cl
3. Domain for 1tmq:
  - Domain d1tmqa2: 1tmq A:1-378 [28762]
    Other proteins in same PDB: d1tmqa1, d1tmqb_
    complexed with ca, cl
4. Domain for 1viw:
  - Domain d1viwa2: 1viw A:1-378 [28763]
    Other proteins in same PDB: d1viwa1, d1viwb_
    complexed with ca, cl, nag

More info for Protein Animal alpha-amylase from c.1.8.1: Amylase, catalytic domain

Timeline for Protein Animal alpha-amylase from c.1.8.1: Amylase, catalytic domain:

Protein Animal alpha-amylase from c.1.8.1: Amylase, catalytic domain first appeared (with stable ids) in SCOP 1.55, called Protein Animal alpha-amylase from c.1.8.1: alpha-Amylases, N-terminal domain
Protein Animal alpha-amylase from c.1.8.1: Amylase, catalytic domain appears in SCOP 1.63
Protein Animal alpha-amylase from c.1.8.1: Amylase, catalytic domain appears in SCOP 1.67
Protein Animal alpha-amylase from c.1.8.1: Amylase, catalytic domain appears in the current release, SCOPe 2.08