Lineage for Protein: Bacterial alpha-amylase

  1. Root: SCOP 1.73
  2. 681097Class c: Alpha and beta proteins (a/b) [51349] (141 folds)
  3. 681098Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 682152Superfamily c.1.8: (Trans)glycosidases [51445] (14 families) (S)
  5. 682153Family c.1.8.1: Amylase, catalytic domain [51446] (24 proteins)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. 682255Protein Bacterial alpha-amylase [51447] (10 species)

Species:

  1. 682256Archaeon Pyrococcus woesei [TaxId:2262] [89464] (3 PDB entries)
    1. Domain for 1mwo:
    2. Domain for 1mxd:
    3. Domain for 1mxg:
  2. 682260Bacillus halmapalus [TaxId:79882] [141768] (3 PDB entries)
    1. Domain for 1w9x:
    2. Domain for 2gjp:
      • 682261Domain d2gjpa2: 2gjp A:5-398 [135284]
        Other proteins in same PDB: d2gjpa1
        automatically matched to 1W9X A:5-398
        complexed with bgc, ca, daf, glc, mal, na
    3. Domain for 2gjr:
  3. 682264Bacillus licheniformis [TaxId:1402] [51448] (4 PDB entries)
    1. Domain for 1bli:
    2. Domain for 1bpl:
    3. Domain for 1ob0:
    4. Domain for 1vjs:
  4. 682269Bacillus sp. 707 [TaxId:1416] [117366] (4 PDB entries)
    1. Domain for 1wp6:
    2. Domain for 1wpc:
    3. Domain for 2d3l:
    4. Domain for 2d3n:
  5. 682274Bacillus sp., ksm-k38 [TaxId:1409] [89463] (6 PDB entries)
    1. Domain for 1ud2:
    2. Domain for 1ud3:
    3. Domain for 1ud4:
    4. Domain for 1ud5:
    5. Domain for 1ud6:
    6. Domain for 1ud8:
  6. 682281Bacillus stearothermophilus [TaxId:1422] [51451] (1 PDB entry)
  7. 682283Bacillus subtilis [TaxId:1423] [51450] (2 PDB entries)
    1. Domain for 1bag:
    2. Domain for 1ua7:
  8. 682286Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId:1390] [63903] (4 PDB entries)
    the N-terminal 300 residues are from B. amyloliquefaciens
    1. Domain for 1e3x:
    2. Domain for 1e3z:
    3. Domain for 1e40:
    4. Domain for 1e43:
  9. 682291Halothermothrix orenii [TaxId:31909] [141767] (1 PDB entry)
  10. 682293Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId:228] [51449] (9 PDB entries)
    1. Domain for 1aqh:
    2. Domain for 1aqm:
    3. Domain for 1b0i:
    4. Domain for 1g94:
    5. Domain for 1g9h:
    6. Domain for 1jd7:
    7. Domain for 1jd9:
    8. Domain for 1kxh:
    9. Domain for 1l0p:

More info for Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain

Timeline for Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain: