SCOP 1.65: Protein: Bacterial alpha-amylase

Lineage for Protein: Bacterial alpha-amylase

Root: SCOP 1.65
Class c: Alpha and beta proteins (a/b) [51349] (121 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (26 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (9 families)

Family c.1.8.1: Amylase, catalytic domain [51446] (22 proteins)
members of the family may contain various insert subdomains
in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

Protein Bacterial alpha-amylase [51447] (7 species)

Species:

Archaeon Pyrococcus woesei [TaxId:2262] [89464] (3 PDB entries)
1. Domain for 1mwo:
  - Domain d1mwoa2: 1mwo A:1-361 [85160]
    Other proteins in same PDB: d1mwoa1
    complexed with ca, zn
2. Domain for 1mxd:
  - Domain d1mxda2: 1mxd A:1-361 [85192]
    Other proteins in same PDB: d1mxda1
    complexed with acr, act, ca, glc, zn
3. Domain for 1mxg:
  - Domain d1mxga2: 1mxg A:1-361 [85194]
    Other proteins in same PDB: d1mxga1
    complexed with acr, ca, eoh, ete, mg, trs, zn
Bacillus licheniformis [TaxId:1402] [51448] (4 PDB entries)
1. Domain for 1bli:
  - Domain d1bli_2: 1bli 3-393 [28702]
    Other proteins in same PDB: d1bli_1
    complexed with ca, na; mutant
2. Domain for 1bpl:
  - Domain d1bpl.1: 1bpl A:,B:193-393 [28703]
    Other proteins in same PDB: d1bplb1
3. Domain for 1ob0:
  - Domain d1ob0a2: 1ob0 A:3-393 [81257]
    Other proteins in same PDB: d1ob0a1
    complexed with ca, na; mutant
4. Domain for 1vjs:
  - Domain d1vjs_2: 1vjs 3-393 [28701]
    Other proteins in same PDB: d1vjs_1
Bacillus sp., ksm-k38 [TaxId:1409] [89463] (6 PDB entries)
1. Domain for 1ud2:
  - Domain d1ud2a2: 1ud2 A:1-390 [88470]
    Other proteins in same PDB: d1ud2a1
    complexed with gol, na
2. Domain for 1ud3:
  - Domain d1ud3a2: 1ud3 A:1-390 [88472]
    Other proteins in same PDB: d1ud3a1
    complexed with na; mutant
3. Domain for 1ud4:
  - Domain d1ud4a2: 1ud4 A:1-390 [88474]
    Other proteins in same PDB: d1ud4a1
    complexed with na
4. Domain for 1ud5:
  - Domain d1ud5a2: 1ud5 A:1-390 [88476]
    Other proteins in same PDB: d1ud5a1
    complexed with na, rb
5. Domain for 1ud6:
  - Domain d1ud6a2: 1ud6 A:1-390 [88478]
    Other proteins in same PDB: d1ud6a1
    complexed with k
6. Domain for 1ud8:
  - Domain d1ud8a2: 1ud8 A:1-390 [88480]
    Other proteins in same PDB: d1ud8a1
    complexed with na
Bacillus stearothermophilus [TaxId:1422] [51451] (1 PDB entry)
- Domain for 1hvx:
  - Domain d1hvxa2: 1hvx A:1-393 [28708]
    Other proteins in same PDB: d1hvxa1
    complexed with ca, na
Bacillus subtilis [TaxId:1423] [51450] (1 PDB entry)
- Domain for 1bag:
  - Domain d1bag_2: 1bag 1-347 [28707]
    Other proteins in same PDB: d1bag_1
    complexed with ca, glc; mutant
Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId:1390] [63903] (4 PDB entries)
the N-terminal 300 residues are from B. amyloliquefaciens
1. Domain for 1e3x:
  - Domain d1e3xa2: 1e3x A:1-393 [59212]
    Other proteins in same PDB: d1e3xa1
    complexed with ca, na
2. Domain for 1e3z:
  - Domain d1e3za2: 1e3z A:1-393 [59214]
    Other proteins in same PDB: d1e3za1
    complexed with ca, cmn, g6d, glc, na
3. Domain for 1e40:
  - Domain d1e40a2: 1e40 A:1-393 [59216]
    Other proteins in same PDB: d1e40a1
    complexed with ca, glc, na, trs
4. Domain for 1e43:
  - Domain d1e43a2: 1e43 A:1-393 [59218]
    Other proteins in same PDB: d1e43a1
    complexed with ca, na
Pseudoalteromonas haloplanctis (Alteromonas haloplanctis) [51449] (9 PDB entries)
1. Domain for 1aqh:
  - Domain d1aqh_2: 1aqh 1-354 [28705]
    Other proteins in same PDB: d1aqh_1
    complexed with ca, cl
2. Domain for 1aqm:
  - Domain d1aqm_2: 1aqm 1-354 [28704]
    Other proteins in same PDB: d1aqm_1
    complexed with ca, cl, trs
3. Domain for 1b0i:
  - Domain d1b0ia2: 1b0i A:1-354 [28706]
    Other proteins in same PDB: d1b0ia1
4. Domain for 1g94:
  - Domain d1g94a2: 1g94 A:1-354 [65170]
    Other proteins in same PDB: d1g94a1
    complexed with ca, cl, daf, glc, trs
5. Domain for 1g9h:
  - Domain d1g9ha2: 1g9h A:1-354 [70163]
    Other proteins in same PDB: d1g9ha1
    complexed with ca, cl, daf, glc, trs
6. Domain for 1jd7:
  - Domain d1jd7a2: 1jd7 A:1-354 [77105]
    Other proteins in same PDB: d1jd7a1
    complexed with ca, cl; mutant
7. Domain for 1jd9:
  - Domain d1jd9a2: 1jd9 A:1-354 [77107]
    Other proteins in same PDB: d1jd9a1
    complexed with ca; mutant
8. Domain for 1kxh:
  - Domain d1kxha2: 1kxh A:1-354 [73152]
    Other proteins in same PDB: d1kxha1
    complexed with acr, ca, cl; mutant
9. Domain for 1l0p:
  - Domain d1l0pa2: 1l0p A:1-354 [73407]
    Other proteins in same PDB: d1l0pa1
    complexed with ca, no3

More info for Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain

Timeline for Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain:

Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain first appeared (with stable ids) in SCOP 1.55, called Protein Bacterial alpha-amylase from c.1.8.1: alpha-Amylases, N-terminal domain
Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain appears in SCOP 1.63
Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain appears in SCOP 1.67
Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain appears in the current release, SCOPe 2.08