Lineage for Protein: Bacterial alpha-amylase

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. Protein Bacterial alpha-amylase [51447] (10 species)

Species:

  1. Bacillus halmapalus [TaxId:79882] [141768] (1 PDB entry)
    Uniprot P19571 38-431
  2. Bacillus licheniformis [TaxId:1402] [51448] (9 PDB entries)
    1. Domain for 1bli:
    2. Domain for 1bpl:
    3. Domain for 1ob0:
    4. Domain for 1vjs:
    5. Domain for 6toy:
    6. Domain for 6toz:
    7. Domain for 6tp0:
    8. Domain for 6tp1:
    9. Domain for 6tp2:
  3. Bacillus sp. 707 [TaxId:1416] [117366] (4 PDB entries)
    Uniprot P19571 38-518
    1. Domain for 1wp6:
    2. Domain for 1wpc:
    3. Domain for 2d3l:
    4. Domain for 2d3n:
  4. Bacillus sp., ksm-k38 [TaxId:1409] [89463] (6 PDB entries)
    1. Domain for 1ud2:
    2. Domain for 1ud3:
    3. Domain for 1ud4:
    4. Domain for 1ud5:
    5. Domain for 1ud6:
    6. Domain for 1ud8:
  5. Bacillus stearothermophilus [TaxId:1422] [51451] (1 PDB entry)
  6. Bacillus subtilis [TaxId:1423] [51450] (2 PDB entries)
    Uniprot P00691
    1. Domain for 1bag:
    2. Domain for 1ua7:
  7. Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId:1390] [63903] (4 PDB entries)
    the N-terminal 300 residues are from B. amyloliquefaciens
    1. Domain for 1e3x:
    2. Domain for 1e3z:
    3. Domain for 1e40:
    4. Domain for 1e43:
  8. Halothermothrix orenii [TaxId:31909] [141767] (1 PDB entry)
    Uniprot Q8GPL8 28-436
  9. Pseudoalteromonas haloplanktis [TaxId:228] [51449] (9 PDB entries)
    1. Domain for 1aqh:
    2. Domain for 1aqm:
    3. Domain for 1b0i:
    4. Domain for 1g94:
    5. Domain for 1g9h:
    6. Domain for 1jd7:
    7. Domain for 1jd9:
    8. Domain for 1kxh:
    9. Domain for 1l0p:
  10. Pyrococcus woesei [TaxId:2262] [89464] (3 PDB entries)
    1. Domain for 1mwo:
      • Domain d1mwoa2: 1mwo A:1-361 [85160]
        Other proteins in same PDB: d1mwoa1
        complexed with ca, zn
        has additional insertions and/or extensions that are not grouped together
    2. Domain for 1mxd:
      • Domain d1mxda2: 1mxd A:1-361 [85192]
        Other proteins in same PDB: d1mxda1
        complexed with act, ca, glc, zn
        has additional insertions and/or extensions that are not grouped together
    3. Domain for 1mxg:
      • Domain d1mxga2: 1mxg A:1-361 [85194]
        Other proteins in same PDB: d1mxga1
        complexed with ca, eoh, ete, mg, trs, zn
        has additional insertions and/or extensions that are not grouped together

More info for Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain

Timeline for Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain: