SCOP 1.71: Species: Trypanosoma brucei

Lineage for Species: Trypanosoma brucei

Root: SCOP 1.71
Class c: Alpha and beta proteins (a/b) [51349] (134 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (32 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (3 proteins)
Protein Eukaryotic ornithine decarboxylase [51423] (3 species)
Species Trypanosoma brucei [TaxId:5691] [51426] (5 PDB entries)

PDB entries in Species: Trypanosoma brucei:

Domain(s) for 1f3t:
1. Domain d1f3ta2: 1f3t A:44-283 [28655]
  Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
2. Domain d1f3tb2: 1f3t B:44-283 [28656]
  Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
3. Domain d1f3tc2: 1f3t C:44-283 [28657]
  Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
4. Domain d1f3td2: 1f3t D:44-283 [28658]
  Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
  complexed with plp, put
Domain(s) for 1njj:
1. Domain d1njja2: 1njj A:44-283 [91906]
  Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
2. Domain d1njjb2: 1njj B:44-283 [91908]
  Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
3. Domain d1njjc2: 1njj C:44-283 [91910]
  Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
4. Domain d1njjd2: 1njj D:44-283 [91912]
  Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
  complexed with get, orx
Domain(s) for 1qu4:
1. Domain d1qu4a2: 1qu4 A:44-283 [28659]
  Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
2. Domain d1qu4b2: 1qu4 B:44-283 [28660]
  Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
3. Domain d1qu4c2: 1qu4 C:44-283 [28661]
  Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
4. Domain d1qu4d2: 1qu4 D:44-283 [28662]
  Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
Domain(s) for 1szr:
1. Domain d1szra2: 1szr A:44-283 [112175]
  Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
2. Domain d1szrb2: 1szr B:44-283 [112177]
  Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
3. Domain d1szrc2: 1szr C:44-283 [112179]
  Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
4. Domain d1szrd2: 1szr D:44-283 [112181]
  Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
  complexed with orx, plg, pxp; mutant
Domain(s) for 2tod:
1. Domain d2toda2: 2tod A:44-283 [28651]
  Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1
2. Domain d2todb2: 2tod B:44-283 [28652]
  Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1
3. Domain d2todc2: 2tod C:44-283 [28653]
  Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1
4. Domain d2todd2: 2tod D:44-283 [28654]
  Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1

More info for Species Trypanosoma brucei [TaxId:5691] from c.1.6.1 Eukaryotic ornithine decarboxylase

Timeline for Species Trypanosoma brucei [TaxId:5691] from c.1.6.1 Eukaryotic ornithine decarboxylase:

Species Trypanosoma brucei [TaxId:5691] from c.1.6.1 Eukaryotic ornithine decarboxylase first appeared (with stable ids) in SCOP 1.55
Species Trypanosoma brucei [TaxId:5691] from c.1.6.1 Eukaryotic ornithine decarboxylase appears in SCOP 1.69
Species Trypanosoma brucei [TaxId:5691] from c.1.6.1 Eukaryotic ornithine decarboxylase appears in SCOP 1.73
Species Trypanosoma brucei [TaxId:5691] from c.1.6.1 Eukaryotic ornithine decarboxylase appears in the current release, SCOPe 2.08, called Species Trypanosome (Trypanosoma brucei) [TaxId:5691] from c.1.6.1 Eukaryotic ornithine decarboxylase