Lineage for Protein: Eukaryotic ornithine decarboxylase

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2080829Superfamily c.1.6: PLP-binding barrel [51419] (2 families) (S)
    circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
  5. 2080830Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 protein domains)
  6. 2080881Protein Eukaryotic ornithine decarboxylase [51423] (3 species)

Species:

  1. 2080882Human (Homo sapiens) [TaxId:9606] [51424] (1 PDB entry)
  2. 2080885Mouse (Mus musculus) [TaxId:10090] [51425] (1 PDB entry)
  3. 2080887Trypanosome (Trypanosoma brucei) [TaxId:5691] [51426] (5 PDB entries)
    Uniprot P07805
    1. Domains for 1f3t:
      1. 2080892Domain d1f3ta2: 1f3t A:44-283 [28655]
        Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
        complexed with plp, put
      2. 2080893Domain d1f3tb2: 1f3t B:44-283 [28656]
        Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
        complexed with plp, put
      3. 2080894Domain d1f3tc2: 1f3t C:44-283 [28657]
        Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
        complexed with plp, put
      4. 2080895Domain d1f3td2: 1f3t D:44-283 [28658]
        Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
        complexed with plp, put
    2. Domains for 1njj:
      1. 2080900Domain d1njja2: 1njj A:44-283 [91906]
        Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
        complexed with get, orx
      2. 2080901Domain d1njjb2: 1njj B:44-283 [91908]
        Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
        complexed with get, orx
      3. 2080902Domain d1njjc2: 1njj C:44-283 [91910]
        Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
        complexed with get, orx
      4. 2080903Domain d1njjd2: 1njj D:44-283 [91912]
        Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
        complexed with get, orx
    3. Domains for 1qu4:
      1. 2080904Domain d1qu4a2: 1qu4 A:44-283 [28659]
        Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
        complexed with plp
      2. 2080905Domain d1qu4b2: 1qu4 B:44-283 [28660]
        Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
        complexed with plp
      3. 2080906Domain d1qu4c2: 1qu4 C:44-283 [28661]
        Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
        complexed with plp
      4. 2080907Domain d1qu4d2: 1qu4 D:44-283 [28662]
        Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
        complexed with plp
    4. Domains for 1szr:
      1. 2080896Domain d1szra2: 1szr A:44-283 [112175]
        Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
        complexed with orx, plg, pxp; mutant
      2. 2080897Domain d1szrb2: 1szr B:44-283 [112177]
        Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
        complexed with orx, plg, pxp; mutant
      3. 2080898Domain d1szrc2: 1szr C:44-283 [112179]
        Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
        complexed with orx, plg, pxp; mutant
      4. 2080899Domain d1szrd2: 1szr D:44-283 [112181]
        Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
        complexed with orx, plg, pxp; mutant
    5. Domains for 2tod:
      1. 2080888Domain d2toda2: 2tod A:44-283 [28651]
        Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1
        complexed with dmo, plp; mutant
      2. 2080889Domain d2todb2: 2tod B:44-283 [28652]
        Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1
        complexed with dmo, plp; mutant
      3. 2080890Domain d2todc2: 2tod C:44-283 [28653]
        Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1
        complexed with dmo, plp; mutant
      4. 2080891Domain d2todd2: 2tod D:44-283 [28654]
        Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1
        complexed with dmo, plp; mutant

More info for Protein Eukaryotic ornithine decarboxylase from c.1.6.1: Alanine racemase-like, N-terminal domain

Timeline for Protein Eukaryotic ornithine decarboxylase from c.1.6.1: Alanine racemase-like, N-terminal domain: