SCOPe 2.08: Protein: Alanine racemase

Lineage for Protein: Alanine racemase

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 proteins)
Protein Alanine racemase [51421] (3 species)

Species:

Bacillus stearothermophilus [TaxId:1422] [51422] (8 PDB entries)
1. Domains for 1bd0:
  1. Domain d1bd0a2: 1bd0 A:12-244 [28642]
    Other proteins in same PDB: d1bd0a1, d1bd0b1
    complexed with in5
  2. Domain d1bd0b2: 1bd0 B:12-244 [28643]
    Other proteins in same PDB: d1bd0a1, d1bd0b1
    complexed with in5
2. Domains for 1epv:
  1. Domain d1epva2: 1epv A:12-244 [76147]
    Other proteins in same PDB: d1epva1, d1epvb1
    complexed with dcs
  2. Domain d1epvb2: 1epv B:12-244 [76149]
    Other proteins in same PDB: d1epva1, d1epvb1
    complexed with dcs
3. Domains for 1ftx:
  1. Domain d1ftxa2: 1ftx A:12-244 [76192]
    Other proteins in same PDB: d1ftxa1, d1ftxb1
    complexed with epc
  2. Domain d1ftxb2: 1ftx B:12-244 [76194]
    Other proteins in same PDB: d1ftxa1, d1ftxb1
    complexed with epc
4. Domains for 1l6f:
  1. Domain d1l6fa2: 1l6f A:12-244 [73610]
    Other proteins in same PDB: d1l6fa1, d1l6fb1
    complexed with pp3
  2. Domain d1l6fb2: 1l6f B:12-244 [73612]
    Other proteins in same PDB: d1l6fa1, d1l6fb1
    complexed with pp3
5. Domains for 1l6g:
  1. Domain d1l6ga2: 1l6g A:12-244 [73614]
    Other proteins in same PDB: d1l6ga1, d1l6gb1
    complexed with pdd
  2. Domain d1l6gb2: 1l6g B:12-244 [73616]
    Other proteins in same PDB: d1l6ga1, d1l6gb1
    complexed with pdd
6. Domains for 1niu:
  1. Domain d1niua2: 1niu A:12-244 [91894]
    Other proteins in same PDB: d1niua1, d1niub1
    complexed with dcs
  2. Domain d1niub2: 1niu B:12-244 [91896]
    Other proteins in same PDB: d1niua1, d1niub1
    complexed with dcs
7. Domains for 1sft:
  1. Domain d1sfta2: 1sft A:12-244 [28644]
    Other proteins in same PDB: d1sfta1, d1sftb1
    complexed with act, plp
  2. Domain d1sftb2: 1sft B:12-244 [28645]
    Other proteins in same PDB: d1sfta1, d1sftb1
    complexed with act, plp
8. Domains for 2sfp:
  1. Domain d2sfpa2: 2sfp A:12-244 [28646]
    Other proteins in same PDB: d2sfpa1, d2sfpb1
    complexed with plp, ppi
  2. Domain d2sfpb2: 2sfp B:12-244 [28647]
    Other proteins in same PDB: d2sfpa1, d2sfpb1
    complexed with plp, ppi
Pseudomonas aeruginosa [TaxId:287] [110345] (1 PDB entry)
Uniprot Q9HTQ2
- Domain for 1rcq:
  - Domain d1rcqa2: 1rcq A:8-233 [104883]
    Other proteins in same PDB: d1rcqa1
    complexed with dly, plp
Streptomyces lavendulae [TaxId:1914] [110346] (3 PDB entries)
Uniprot Q65YW7
1. Domain for 1vfh:
  - Domain d1vfha2: 1vfh A:13-249 [108575]
    Other proteins in same PDB: d1vfha1, d1vfha3
    complexed with plp
2. Domains for 1vfs:
  1. Domain d1vfsa2: 1vfs A:13-249 [108585]
    Other proteins in same PDB: d1vfsa1, d1vfsa3, d1vfsb1, d1vfsb3
    complexed with cl, dcs
  2. Domain d1vfsb2: 1vfs B:1013-1249 [108587]
    Other proteins in same PDB: d1vfsa1, d1vfsa3, d1vfsb1, d1vfsb3
    complexed with cl, dcs
3. Domains for 1vft:
  1. Domain d1vfta2: 1vft A:13-249 [108589]
    Other proteins in same PDB: d1vfta3, d1vfta4, d1vftb1, d1vftb3
    complexed with cl, dcs
  2. Domain d1vftb2: 1vft B:1013-1249 [108591]
    Other proteins in same PDB: d1vfta3, d1vfta4, d1vftb1, d1vftb3
    complexed with cl, dcs

More info for Protein Alanine racemase from c.1.6.1: Alanine racemase-like, N-terminal domain

Timeline for Protein Alanine racemase from c.1.6.1: Alanine racemase-like, N-terminal domain:

Protein Alanine racemase from c.1.6.1: Alanine racemase-like, N-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein Alanine racemase from c.1.6.1: Alanine racemase-like, N-terminal domain appears in SCOPe 2.07