SCOPe 2.06: Family c.1.6.1: Alanine racemase-like, N-terminal domain

Lineage for Family c.1.6.1: Alanine racemase-like, N-terminal domain

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
   circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand

5. Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 proteins)

Proteins:

1. Alanine racemase [51421] (3 species)

   1. Species Bacillus stearothermophilus [TaxId:1422] [51422] (8 PDB entries)

   2. Species Pseudomonas aeruginosa [TaxId:287] [110345] (1 PDB entry)
      Uniprot Q9HTQ2

   3. Species Streptomyces lavendulae [TaxId:1914] [110346] (3 PDB entries)
      Uniprot Q65YW7

2. D-serine dehydratase [310801] (2 species)

   1. Species Chicken (Gallus gallus) [TaxId:9031] [311066] (4 PDB entries)

   2. Species Idiomarina loihiensis [TaxId:283942] [311065] (1 PDB entry)

3. Diaminopimelate decarboxylase LysA [89457] (3 species)
   most similar to eukaryotic ODC

   1. Species Escherichia coli [TaxId:562] [102048] (2 PDB entries)

   2. Species Methanococcus jannaschii [TaxId:2190] [110347] (2 PDB entries)
      Uniprot Q58497

   3. Species Mycobacterium tuberculosis [TaxId:1773] [89458] (2 PDB entries)

4. Eukaryotic ornithine decarboxylase [51423] (3 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [51424] (1 PDB entry)

   2. Species Mouse (Mus musculus) [TaxId:10090] [51425] (1 PDB entry)

   3. Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [51426] (5 PDB entries)
      Uniprot P07805

More info for Family c.1.6.1: Alanine racemase-like, N-terminal domain

Timeline for Family c.1.6.1: Alanine racemase-like, N-terminal domain:

• Family c.1.6.1: Alanine racemase-like, N-terminal domain first appeared (with stable ids) in SCOP 1.55
  
• Family c.1.6.1: Alanine racemase-like, N-terminal domain appears in SCOPe 2.05
  
• Family c.1.6.1: Alanine racemase-like, N-terminal domain appears in SCOPe 2.07
  
• Family c.1.6.1: Alanine racemase-like, N-terminal domain appears in the current release, SCOPe 2.08