Lineage for Protein: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)

  1. Root: SCOP 1.73
  2. 681097Class c: Alpha and beta proteins (a/b) [51349] (141 folds)
  3. 681098Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 681300Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (6 families) (S)
  5. 681364Family c.1.2.3: Decarboxylase [51375] (3 proteins)
  6. 681395Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) [51376] (7 species)

Species:

  1. 681396Archaeon Methanobacterium thermoautotrophicum [TaxId:145262] [51379] (18 PDB entries)
    1. Domain for 1dv7:
    2. Domains for 1dvj:
      1. 681400Domain d1dvja_: 1dvj A: [28546]
      2. 681401Domain d1dvjb_: 1dvj B: [28547]
      3. 681402Domain d1dvjc_: 1dvj C: [28548]
      4. 681403Domain d1dvjd_: 1dvj D: [28549]
        complex with 6-azaUMP
        complexed with up6; mutant
    3. Domain for 1kly:
    4. Domain for 1klz:
    5. Domains for 1km0:
      1. 681416Domain d1km0a_: 1km0 A: [72732]
      2. 681417Domain d1km0b_: 1km0 B: [72733]
      3. 681418Domain d1km0c_: 1km0 C: [72734]
      4. 681419Domain d1km0d_: 1km0 D: [72735]
        complexed with up6; mutant
    6. Domains for 1km1:
      1. 681413Domain d1km1a_: 1km1 A: [72736]
      2. 681414Domain d1km1b_: 1km1 B: [72737]
        complexed with up6; mutant
    7. Domain for 1km2:
    8. Domain for 1km3:
    9. Domain for 1km4:
    10. Domain for 1km5:
    11. Domain for 1km6:
    12. Domains for 1lol:
      1. 681421Domain d1lola_: 1lol A: [74150]
      2. 681422Domain d1lolb_: 1lol B: [74151]
        complexed with bu2, xmp
    13. Domain for 1loq:
    14. Domain for 1lor:
    15. Domains for 1los:
      1. 681425Domain d1losa_: 1los A: [74157]
      2. 681426Domain d1losb_: 1los B: [74158]
      3. 681427Domain d1losc_: 1los C: [74159]
      4. 681428Domain d1losd_: 1los D: [74160]
        complexed with up6; mutant
    16. Domains for 1lp6:
      1. 681423Domain d1lp6a_: 1lp6 A: [74171]
      2. 681424Domain d1lp6b_: 1lp6 B: [74172]
        complexed with c5p
    17. Domains for 1x1z:
      1. 681397Domain d1x1za1: 1x1z A:11-222 [121613]
        automatically matched to d1klya_
        complexed with bmp, gol; mutant
      2. 681398Domain d1x1zb1: 1x1z B:1011-1222 [121614]
        automatically matched to d1klya_
        complexed with bmp, gol; mutant
    18. Domains for 2e6y:
      1. 681411Domain d2e6ya1: 2e6y A:11-222 [132046]
        automatically matched to d1klya_
        complexed with gol, u5p; mutant
      2. 681412Domain d2e6yb1: 2e6y B:1011-1222 [132047]
        automatically matched to d1klya_
        complexed with gol, u5p; mutant
  2. 681429Bacillus subtilis [TaxId:1423] [51377] (1 PDB entry)
  3. 681433Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51380] (2 PDB entries)
    1. Domains for 1dqw:
      1. 681434Domain d1dqwa_: 1dqw A: [28551]
      2. 681435Domain d1dqwb_: 1dqw B: [28552]
      3. 681436Domain d1dqwc_: 1dqw C: [28553]
      4. 681437Domain d1dqwd_: 1dqw D: [28554]
        mutant
    2. Domains for 1dqx:
      1. 681438Domain d1dqxa_: 1dqx A: [28555]
      2. 681439Domain d1dqxb_: 1dqx B: [28556]
      3. 681440Domain d1dqxc_: 1dqx C: [28557]
      4. 681441Domain d1dqxd_: 1dqx D: [28558]
        complex with 6-hydroxyuridine 5'-phosphate (BMP)
        complexed with bmp; mutant
  4. 681442Escherichia coli [TaxId:562] [51378] (3 PDB entries)
    1. Domains for 1eix:
      1. 681443Domain d1eixa_: 1eix A: [28542]
      2. 681444Domain d1eixb_: 1eix B: [28543]
      3. 681445Domain d1eixc_: 1eix C: [28544]
      4. 681446Domain d1eixd_: 1eix D: [28545]
        complexed with bmq
    2. Domains for 1jjk:
      1. 681449Domain d1jjka_: 1jjk A: [63122]
      2. 681450Domain d1jjkb_: 1jjk B: [63123]
      3. 681451Domain d1jjkc_: 1jjk C: [63124]
      4. 681452Domain d1jjkd_: 1jjk D: [63125]
      5. 681453Domain d1jjke_: 1jjk E: [63126]
      6. 681454Domain d1jjkf_: 1jjk F: [63127]
      7. 681455Domain d1jjkg_: 1jjk G: [63128]
      8. 681456Domain d1jjkh_: 1jjk H: [63129]
      9. 681457Domain d1jjki_: 1jjk I: [63130]
      10. 681458Domain d1jjkj_: 1jjk J: [63131]
      11. 681459Domain d1jjkk_: 1jjk K: [63132]
      12. 681460Domain d1jjkl_: 1jjk L: [63133]
      13. 681461Domain d1jjkm_: 1jjk M: [63134]
      14. 681462Domain d1jjkn_: 1jjk N: [63135]
      15. 681463Domain d1jjko_: 1jjk O: [63136]
      16. 681464Domain d1jjkp_: 1jjk P: [63137]
        complexed with bmp
    3. Domains for 1l2u:
      1. 681447Domain d1l2ua_: 1l2u A: [73516]
      2. 681448Domain d1l2ub_: 1l2u B: [73517]
  5. 681465Plasmodium vivax [TaxId:5855] [141747] (1 PDB entry)
  6. 681467Pyrococcus horikoshii [TaxId:53953] [141748] (4 PDB entries)
    1. Domains for 2cz5:
      1. 681472Domain d2cz5a1: 2cz5 A:1-208 [131038]
        complexed with cit, gol
      2. 681473Domain d2cz5b1: 2cz5 B:1-208 [131039]
        automatically matched to 2CZ5 A:1-208
        complexed with cit, gol
    2. Domains for 2czd:
      1. 681468Domain d2czda1: 2czd A:1-206 [131045]
        automatically matched to 2CZ5 A:1-208
        complexed with dtt, gol
      2. 681469Domain d2czdb1: 2czd B:1-207 [131046]
        automatically matched to 2CZ5 A:1-208
        complexed with dtt, gol
    3. Domains for 2cze:
      1. 681470Domain d2czea1: 2cze A:1-208 [131047]
        automatically matched to 2CZ5 A:1-208
        complexed with cit, gol, u5p
      2. 681471Domain d2czeb1: 2cze B:1-208 [131048]
        automatically matched to 2CZ5 A:1-208
        complexed with cit, gol, u5p
    4. Domains for 2czf:
      1. 681474Domain d2czfa1: 2czf A:1-208 [131049]
        automatically matched to 2CZ5 A:1-208
        complexed with xmp
      2. 681475Domain d2czfb1: 2czf B:1-208 [131050]
        automatically matched to 2CZ5 A:1-208
        complexed with xmp
  7. 681476Thermotoga maritima [TaxId:2336] [141746] (1 PDB entry)

More info for Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) from c.1.2.3: Decarboxylase

Timeline for Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) from c.1.2.3: Decarboxylase: