Lineage for Family c.1.2.3: Decarboxylase

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1565956Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1566369Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families) (S)
  5. 1566456Family c.1.2.3: Decarboxylase [51375] (4 proteins)

Proteins:

  1. 15664573-keto-L-gulonate 6-phosphate decarboxylase [75050] (2 species)
    1. 1566458Species Escherichia coli [TaxId:562] [75051] (14 PDB entries)
      Uniprot P39304
    2. 1566486Species Streptococcus mutans [TaxId:1309] [188972] (3 PDB entries)
  2. Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) [51376] (7 species)
    1. 1566497Species Bacillus subtilis [TaxId:1423] [51377] (1 PDB entry)
    2. 1566501Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51380] (2 PDB entries)
    3. 1566510Species Escherichia coli [TaxId:562] [51378] (3 PDB entries)
    4. Species Methanobacterium thermoautotrophicum [TaxId:145262] [51379] (16 PDB entries)
    5. 1566562Species Plasmodium vivax [TaxId:5855] [141747] (1 PDB entry)
    6. 1566564Species Pyrococcus horikoshii [TaxId:53953] [141748] (4 PDB entries)
      Uniprot O58462 1-208
    7. 1566573Species Thermotoga maritima [TaxId:2336] [141746] (1 PDB entry)
      Uniprot Q9WYG7 1-198
  3. 1566575Protozoan orotidine monophosphate decarboxylase [141749] (5 species)
    1. 1566576Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [141751] (2 PDB entries)
      Uniprot Q8T6J6 1-323
    2. 1566581Species Plasmodium berghei [TaxId:5821] [141752] (1 PDB entry)
      Uniprot Q4Z4C3 2-325
    3. 1566583Species Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId:36329] [159376] (5 PDB entries)
    4. 1566592Species Plasmodium vivax [TaxId:5855] [141750] (1 PDB entry)
    5. 1566594Species Plasmodium yoelii [TaxId:5861] [141753] (1 PDB entry)
      Uniprot Q7RPE4 2-322
  4. 1566596automated matches [190130] (11 species)
    not a true protein
    1. 1566597Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188935] (5 PDB entries)
    2. 1566614Species Escherichia coli [TaxId:562] [186853] (1 PDB entry)
    3. 1566616Species Geobacillus kaustophilus [TaxId:235909] [188260] (2 PDB entries)
    4. 1566623Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [187245] (4 PDB entries)
    5. 1566632Species Methanobacterium thermoautotrophicum [TaxId:187420] [189749] (5 PDB entries)
    6. 1566643Species Methanothermobacter thermautotrophicus [TaxId:145262] [189782] (26 PDB entries)
    7. 1566687Species Methanothermobacter thermautotrophicus [TaxId:187420] [188934] (67 PDB entries)
    8. 1566851Species Plasmodium berghei [TaxId:5821] [187698] (1 PDB entry)
    9. 1566853Species Plasmodium falciparum [TaxId:36329] [187244] (5 PDB entries)
    10. 1566866Species Vibrio cholerae [TaxId:243277] [225822] (1 PDB entry)
    11. 1566869Species Vibrio cholerae [TaxId:666] [226270] (1 PDB entry)

More info for Family c.1.2.3: Decarboxylase

Timeline for Family c.1.2.3: Decarboxylase: