SCOP 1.69: Protein: Triosephosphate isomerase

Lineage for Protein: Triosephosphate isomerase

Root: SCOP 1.69
Class c: Alpha and beta proteins (a/b) [51349] (136 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (31 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.1: Triosephosphate isomerase (TIM) [51351] (1 family)
Family c.1.1.1: Triosephosphate isomerase (TIM) [51352] (1 protein)
Protein Triosephosphate isomerase [51353] (17 species)

Species:

Amoeba (Entamoeba histolytica) [82236] (1 PDB entry)
- Domains for 1m6j:
  1. Domain d1m6ja_: 1m6j A: [78693]
  2. Domain d1m6jb_: 1m6j B: [78694]
Archaeon Pyrococcus woesei [TaxId:2262] [63891] (1 PDB entry)
- Domains for 1hg3:
  1. Domain d1hg3a_: 1hg3 A: [61025]
  2. Domain d1hg3b_: 1hg3 B: [61026]
  3. Domain d1hg3c_: 1hg3 C: [61027]
  4. Domain d1hg3d_: 1hg3 D: [61028]
  5. Domain d1hg3e_: 1hg3 E: [61029]
  6. Domain d1hg3f_: 1hg3 F: [61030]
  7. Domain d1hg3g_: 1hg3 G: [61031]
  8. Domain d1hg3h_: 1hg3 H: [61032]
Bacillus stearothermophilus [TaxId:1422] [51363] (2 PDB entries)
1. Domains for 1btm:
  1. Domain d1btma_: 1btm A: [28513]
  2. Domain d1btmb_: 1btm B: [28514]
2. Domains for 2btm:
  1. Domain d2btma_: 2btm A: [28511]
  2. Domain d2btmb_: 2btm B: [28512]
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51356] (7 PDB entries)
1. Domains for 1i45:
  1. Domain d1i45a_: 1i45 A: [61665]
  2. Domain d1i45b_: 1i45 B: [61666]
2. Domains for 1ney:
  1. Domain d1neya_: 1ney A: [80449]
  2. Domain d1neyb_: 1ney B: [80450]
3. Domains for 1nf0:
  1. Domain d1nf0a_: 1nf0 A: [80451]
  2. Domain d1nf0b_: 1nf0 B: [80452]
4. Domains for 1ypi:
  1. Domain d1ypia_: 1ypi A: [28459]
  2. Domain d1ypib_: 1ypi B: [28460]
5. Domains for 2ypi:
  1. Domain d2ypia_: 2ypi A: [28461]
  2. Domain d2ypib_: 2ypi B: [28462]
6. Domains for 3ypi:
  1. Domain d3ypia_: 3ypi A: [28463]
  2. Domain d3ypib_: 3ypi B: [28464]
7. Domains for 7tim:
  1. Domain d7tima_: 7tim A: [28457]
  2. Domain d7timb_: 7tim B: [28458]
Chicken (Gallus gallus) [TaxId:9031] [51354] (16 PDB entries)
1. Domains for 1spq:
  1. Domain d1spqa_: 1spq A: [105878]
  2. Domain d1spqb_: 1spq B: [105879]
2. Domains for 1sq7:
  1. Domain d1sq7a_: 1sq7 A: [105886]
  2. Domain d1sq7b_: 1sq7 B: [105887]
3. Domains for 1ssd:
  1. Domain d1ssda_: 1ssd A: [105979]
  2. Domain d1ssdb_: 1ssd B: [105980]
4. Domains for 1ssg:
  1. Domain d1ssga_: 1ssg A: [105984]
  2. Domain d1ssgb_: 1ssg B: [105985]
5. Domains for 1su5:
  1. Domain d1su5a_: 1su5 A: [106020]
  2. Domain d1su5b_: 1su5 B: [106021]
6. Domains for 1sw0:
  1. Domain d1sw0a_: 1sw0 A: [106060]
  2. Domain d1sw0b_: 1sw0 B: [106061]
7. Domains for 1sw3:
  1. Domain d1sw3a_: 1sw3 A: [106065]
  2. Domain d1sw3b_: 1sw3 B: [106066]
8. Domains for 1sw7:
  1. Domain d1sw7a_: 1sw7 A: [106073]
  2. Domain d1sw7b_: 1sw7 B: [106074]
9. Domains for 1tim:
  1. Domain d1tima_: 1tim A: [28453]
  2. Domain d1timb_: 1tim B: [28454]
10. Domains for 1tpb:
  1. Domain d1tpb1_: 1tpb 1: [28445]
  2. Domain d1tpb2_: 1tpb 2: [28446]
11. Domains for 1tpc:
  1. Domain d1tpc1_: 1tpc 1: [28447]
  2. Domain d1tpc2_: 1tpc 2: [28448]
12. Domains for 1tph:
  1. Domain d1tph1_: 1tph 1: [28439]
  2. Domain d1tph2_: 1tph 2: [28440]
13. Domains for 1tpu:
  1. Domain d1tpua_: 1tpu A: [28441]
  2. Domain d1tpub_: 1tpu B: [28442]
14. Domains for 1tpv:
  1. Domain d1tpva_: 1tpv A: [28443]
  2. Domain d1tpvb_: 1tpv B: [28444]
15. Domains for 1tpw:
  1. Domain d1tpwa_: 1tpw A: [28449]
  2. Domain d1tpwb_: 1tpw B: [28450]
16. Domains for 8tim:
  1. Domain d8tima_: 8tim A: [28451]
  2. Domain d8timb_: 8tim B: [28452]
Escherichia coli [TaxId:562] [51361] (1 PDB entry)
- Domains for 1tre:
  1. Domain d1trea_: 1tre A: [28505]
  2. Domain d1treb_: 1tre B: [28506]
Human (Homo sapiens) [TaxId:9606] [51355] (1 PDB entry)
- Domains for 1hti:
  1. Domain d1htia_: 1hti A: [28455]
  2. Domain d1htib_: 1hti B: [28456]
Hybrid between Escherichia coli and chicken TIM [51362] (1 PDB entry)
- Domains for 1tmh:
  1. Domain d1tmha_: 1tmh A: [28507]
  2. Domain d1tmhb_: 1tmh B: [28508]
  3. Domain d1tmhc_: 1tmh C: [28509]
  4. Domain d1tmhd_: 1tmh D: [28510]
Leishmania mexicana [TaxId:5665] [51360] (4 PDB entries)
1. Domain for 1amk:
  - Domain d1amk__: 1amk - [28503]
2. Domain for 1if2:
  - Domain d1if2a_: 1if2 A: [62342]
3. Domain for 1n55:
  - Domain d1n55a_: 1n55 A: [80007]
    ultra-high resolution structure
4. Domain for 1qds:
  - Domain d1qdsa_: 1qds A: [28504]
Nematode (Caenorhabditis elegans) [TaxId:6239] [82235] (1 PDB entry)
- Domains for 1mo0:
  1. Domain d1mo0a_: 1mo0 A: [79329]
  2. Domain d1mo0b_: 1mo0 B: [79330]
Plasmodium falciparum [51359] (6 PDB entries)
1. Domain for 1lyx:
  - Domain d1lyxa_: 1lyx A: [78304]
2. Domains for 1lzo:
  1. Domain d1lzoa_: 1lzo A: [78307]
  2. Domain d1lzob_: 1lzo B: [78308]
  3. Domain d1lzoc_: 1lzo C: [78309]
  4. Domain d1lzod_: 1lzo D: [78310]
3. Domains for 1m7o:
  1. Domain d1m7oa_: 1m7o A: [78740]
  2. Domain d1m7ob_: 1m7o B: [78741]
4. Domains for 1m7p:
  1. Domain d1m7pa_: 1m7p A: [78742]
  2. Domain d1m7pb_: 1m7p B: [78743]
5. Domains for 1o5x:
  1. Domain d1o5xa_: 1o5x A: [92528]
  2. Domain d1o5xb_: 1o5x B: [92529]
6. Domains for 1ydv:
  1. Domain d1ydva_: 1ydv A: [28501]
  2. Domain d1ydvb_: 1ydv B: [28502]
Rabbit (Oryctolagus cuniculus) [TaxId:9986] [102035] (3 PDB entries)
1. Domains for 1r2r:
  1. Domain d1r2ra_: 1r2r A: [96875]
  2. Domain d1r2rb_: 1r2r B: [96876]
  3. Domain d1r2rc_: 1r2r C: [96877]
  4. Domain d1r2rd_: 1r2r D: [96878]
2. Domains for 1r2s:
  1. Domain d1r2sa_: 1r2s A: [96879]
  2. Domain d1r2sb_: 1r2s B: [96880]
  3. Domain d1r2sc_: 1r2s C: [96881]
  4. Domain d1r2sd_: 1r2s D: [96882]
3. Domains for 1r2t:
  1. Domain d1r2ta_: 1r2t A: [96883]
  2. Domain d1r2tb_: 1r2t B: [96884]
Thermoproteus tenax [TaxId:2271] [110342] (1 PDB entry)
- Domains for 1w0m:
  1. Domain d1w0ma_: 1w0m A: [109027]
  2. Domain d1w0mb_: 1w0m B: [109028]
  3. Domain d1w0mc_: 1w0m C: [109029]
  4. Domain d1w0md_: 1w0m D: [109030]
  5. Domain d1w0me_: 1w0m E: [109031]
  6. Domain d1w0mf_: 1w0m F: [109032]
  7. Domain d1w0mg_: 1w0m G: [109033]
  8. Domain d1w0mh_: 1w0m H: [109034]
Thermotoga maritima [TaxId:243274] [51365] (1 PDB entry)
- Domains for 1b9b:
  1. Domain d1b9ba_: 1b9b A: [28531]
  2. Domain d1b9bb_: 1b9b B: [28532]
Trypanosoma brucei [TaxId:5691] [51357] (19 PDB entries)
1. Domains for 1ag1:
  1. Domain d1ag1o_: 1ag1 O: [28474]
  2. Domain d1ag1t_: 1ag1 T: [28475]
2. Domains for 1dkw:
  1. Domain d1dkwa_: 1dkw A: [28487]
  2. Domain d1dkwb_: 1dkw B: [28488]
    modified substrate binding site
3. Domains for 1iig:
  1. Domain d1iiga_: 1iig A: [62428]
  2. Domain d1iigb_: 1iig B: [62429]
4. Domains for 1iih:
  1. Domain d1iiha_: 1iih A: [62430]
  2. Domain d1iihb_: 1iih B: [62431]
5. Domains for 1kv5:
  1. Domain d1kv5a_: 1kv5 A: [73052]
  2. Domain d1kv5b_: 1kv5 B: [73053]
6. Domains for 1ml1:
  1. Domain d1ml1a_: 1ml1 A: [28489]
  2. Domain d1ml1c_: 1ml1 C: [28490]
  3. Domain d1ml1e_: 1ml1 E: [28491]
  4. Domain d1ml1g_: 1ml1 G: [28492]
  5. Domain d1ml1i_: 1ml1 I: [28493]
  6. Domain d1ml1k_: 1ml1 K: [28494]
7. Domains for 1mss:
  1. Domain d1mssa_: 1mss A: [28480]
  2. Domain d1mssb_: 1mss B: [28481]
    different dimerisation mode mutant
8. Domains for 1tpd:
  1. Domain d1tpda_: 1tpd A: [28470]
  2. Domain d1tpdb_: 1tpd B: [28471]
9. Domain for 1tpe:
  - Domain d1tpe__: 1tpe - [28469]
10. Domains for 1tpf:
  1. Domain d1tpfa_: 1tpf A: [28467]
  2. Domain d1tpfb_: 1tpf B: [28468]
11. Domains for 1trd:
  1. Domain d1trda_: 1trd A: [28476]
  2. Domain d1trdb_: 1trd B: [28477]
12. Domain for 1tri:
  - Domain d1tri__: 1tri - [28479]
    monomeric mutant structure
13. Domains for 1tsi:
  1. Domain d1tsia_: 1tsi A: [28485]
  2. Domain d1tsib_: 1tsi B: [28486]
14. Domain for 1tti:
  - Domain d1tti__: 1tti - [28482]
15. Domain for 1ttj:
  - Domain d1ttj__: 1ttj - [28478]
16. Domains for 3tim:
  1. Domain d3tima_: 3tim A: [28483]
  2. Domain d3timb_: 3tim B: [28484]
17. Domains for 4tim:
  1. Domain d4tima_: 4tim A: [28472]
  2. Domain d4timb_: 4tim B: [28473]
18. Domains for 5tim:
  1. Domain d5tima_: 5tim A: [28465]
  2. Domain d5timb_: 5tim B: [28466]
19. Domains for 6tim:
  1. Domain d6tima_: 6tim A: [28495]
  2. Domain d6timb_: 6tim B: [28496]
Trypanosoma cruzi [TaxId:5693] [51358] (3 PDB entries)
1. Domains for 1ci1:
  1. Domain d1ci1a_: 1ci1 A: [28499]
  2. Domain d1ci1b_: 1ci1 B: [28500]
    structure in hexane
2. Domains for 1sux:
  1. Domain d1suxa_: 1sux A: [106031]
  2. Domain d1suxb_: 1sux B: [106032]
3. Domains for 1tcd:
  1. Domain d1tcda_: 1tcd A: [28497]
  2. Domain d1tcdb_: 1tcd B: [28498]
Vibrio marinus [TaxId:90736] [51364] (2 PDB entries)
1. Domains for 1aw1:
  1. Domain d1aw1a_: 1aw1 A: [28515]
  2. Domain d1aw1b_: 1aw1 B: [28516]
  3. Domain d1aw1d_: 1aw1 D: [28517]
  4. Domain d1aw1e_: 1aw1 E: [28518]
  5. Domain d1aw1g_: 1aw1 G: [28519]
  6. Domain d1aw1h_: 1aw1 H: [28520]
  7. Domain d1aw1j_: 1aw1 J: [28521]
  8. Domain d1aw1k_: 1aw1 K: [28522]
2. Domains for 1aw2:
  1. Domain d1aw2a_: 1aw2 A: [28523]
  2. Domain d1aw2b_: 1aw2 B: [28524]
  3. Domain d1aw2d_: 1aw2 D: [28525]
  4. Domain d1aw2e_: 1aw2 E: [28526]
  5. Domain d1aw2g_: 1aw2 G: [28527]
  6. Domain d1aw2h_: 1aw2 H: [28528]
  7. Domain d1aw2j_: 1aw2 J: [28529]
  8. Domain d1aw2k_: 1aw2 K: [28530]

More info for Protein Triosephosphate isomerase from c.1.1.1: Triosephosphate isomerase (TIM)

Timeline for Protein Triosephosphate isomerase from c.1.1.1: Triosephosphate isomerase (TIM):

Protein Triosephosphate isomerase from c.1.1.1: Triosephosphate isomerase (TIM) first appeared (with stable ids) in SCOP 1.55
Protein Triosephosphate isomerase from c.1.1.1: Triosephosphate isomerase (TIM) appears in SCOP 1.67
Protein Triosephosphate isomerase from c.1.1.1: Triosephosphate isomerase (TIM) appears in SCOP 1.71
Protein Triosephosphate isomerase from c.1.1.1: Triosephosphate isomerase (TIM) appears in the current release, SCOPe 2.08