Lineage for Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 678711Fold b.86: Hedgehog/intein (Hint) domain [51293] (1 superfamily)
    complex fold made of five beta-hairpin units and a b-ribbon arc
  4. 678712Superfamily b.86.1: Hedgehog/intein (Hint) domain [51294] (2 families) (S)
    duplication: contains two intertwined structural repeats
  5. 678717Family b.86.1.2: Intein (protein splicing domain) [51298] (4 proteins)
  6. 678727Protein VMA1-derived endonuclease (VDE) PI-Scei intein [51299] (1 species)
    also contains a homing endonuclease and DNA-binding domains
  7. 678728Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51300] (8 PDB entries)

PDB entries in Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]:

  1. Domain(s) for 1dfa:
  2. Domain(s) for 1ef0:
    1. 678733Domain d1ef0a1: 1ef0 A:1-180,A:416-455 [28376]
      Other proteins in same PDB: d1ef0a2, d1ef0a3, d1ef0b2, d1ef0b3
    2. 678734Domain d1ef0b1: 1ef0 B:1-180,B:416-458 [28377]
      Other proteins in same PDB: d1ef0a2, d1ef0a3, d1ef0b2, d1ef0b3
      miniprecursor; a few extra residues are added at the N-terminus
      complexed with zn
  3. Domain(s) for 1gpp:
  4. Domain(s) for 1jva:
    1. 678730Domain d1jvaa1: 1jva A:282-463,A:699-741 [77175]
      Other proteins in same PDB: d1jvaa2, d1jvaa3, d1jvab2, d1jvab3
    2. 678731Domain d1jvab1: 1jva B:279-463,B:699-741 [77178]
      Other proteins in same PDB: d1jvaa2, d1jvaa3, d1jvab2, d1jvab3
      contains the N and C extein propeptides
      mutant
  5. Domain(s) for 1lws:
  6. Domain(s) for 1lwt:
  7. Domain(s) for 1um2:
    1. 678737Domain d1um2a1: 1um2 A:284-463,A:699-737 [107946]
      Other proteins in same PDB: d1um2a2, d1um2a3, d1um2b2, d1um2b3
    2. 678738Domain d1um2b1: 1um2 B:284-463,B:699-737 [107949]
      Other proteins in same PDB: d1um2a2, d1um2a3, d1um2b2, d1um2b3
      complexed with the ligated extein segment (SQ P17255 281-283,738-741), chains C and D
      mutant
  8. Domain(s) for 1vde:
    1. 678735Domain d1vdea1: 1vde A:1-180,A:416-454 [28378]
      Other proteins in same PDB: d1vdea2, d1vdea3, d1vdeb2, d1vdeb3
    2. 678736Domain d1vdeb1: 1vde B:1-180,B:416-454 [28379]
      Other proteins in same PDB: d1vdea2, d1vdea3, d1vdeb2, d1vdeb3

More info for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from b.86.1.2 VMA1-derived endonuclease (VDE) PI-Scei intein

Timeline for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from b.86.1.2 VMA1-derived endonuclease (VDE) PI-Scei intein: