SCOPe 2.05: Protein: VMA1-derived endonuclease (VDE) PI-Scei intein

Root: SCOPe 2.05
Class b: All beta proteins [48724] (176 folds)
Fold b.86: Hedgehog/intein (Hint) domain [51293] (1 superfamily)
complex fold made of five beta-hairpin units and a b-ribbon arc
Superfamily b.86.1: Hedgehog/intein (Hint) domain [51294] (3 families)
duplication: contains two intertwined structural repeats
Family b.86.1.2: Intein (protein splicing domain) [51298] (5 proteins)
Protein VMA1-derived endonuclease (VDE) PI-Scei intein [51299] (1 species)
also contains a homing endonuclease and DNA-binding domains

Domain for 1dfa:
- Domain d1dfaa1: 1dfa A:1-180,A:416-454 [28375]
  Other proteins in same PDB: d1dfaa2, d1dfaa3
Domains for 1ef0:
1. Domain d1ef0a1: 1ef0 A:1-180,A:416-455 [28376]
  Other proteins in same PDB: d1ef0a2, d1ef0a3, d1ef0b2, d1ef0b3
  miniprecursor; a few extra residues are added at the N-terminus
  complexed with zn
2. Domain d1ef0b1: 1ef0 B:1-180,B:416-458 [28377]
  Other proteins in same PDB: d1ef0a2, d1ef0a3, d1ef0b2, d1ef0b3
  miniprecursor; a few extra residues are added at the N-terminus
  complexed with zn
Domain for 1gpp:
- Domain d1gppa_: 1gpp A: [76262]
  domain I only
Domains for 1jva:
1. Domain d1jvaa1: 1jva A:282-463,A:699-741 [77175]
  Other proteins in same PDB: d1jvaa2, d1jvaa3, d1jvab2, d1jvab3
  contains the N and C extein propeptides
2. Domain d1jvab1: 1jva B:279-463,B:699-741 [77178]
  Other proteins in same PDB: d1jvaa2, d1jvaa3, d1jvab2, d1jvab3
  contains the N and C extein propeptides
Domain for 1lws:
- Domain d1lwsa1: 1lws A:1-180,A:416-454 [78275]
  Other proteins in same PDB: d1lwsa2, d1lwsa3
  protein/DNA complex; complexed with ca
Domain for 1lwt:
- Domain d1lwta1: 1lwt A:1-180,A:416-454 [78278]
  Other proteins in same PDB: d1lwta2, d1lwta3
  protein/DNA complex

Domains for 1um2:

Domain d1um2a1: 1um2 A:284-463,A:699-737 [107946]
Other proteins in same PDB: d1um2a2, d1um2a3, d1um2b2, d1um2b3
complexed with the ligated extein segment (Uniprot P17255 281-283,738-741), chains C and D

Domain d1um2b1: 1um2 B:284-463,B:699-737 [107949]
Other proteins in same PDB: d1um2a2, d1um2a3, d1um2b2, d1um2b3
complexed with the ligated extein segment (Uniprot P17255 281-283,738-741), chains C and D

Domains for 1vde:
1. Domain d1vdea1: 1vde A:1-180,A:416-454 [28378]
  Other proteins in same PDB: d1vdea2, d1vdea3, d1vdeb2, d1vdeb3
2. Domain d1vdeb1: 1vde B:1-180,B:416-454 [28379]
  Other proteins in same PDB: d1vdea2, d1vdea3, d1vdeb2, d1vdeb3

Timeline for Protein VMA1-derived endonuclease (VDE) PI-Scei intein from b.86.1.2: Intein (protein splicing domain):

Protein VMA1-derived endonuclease (VDE) PI-Scei intein from b.86.1.2: Intein (protein splicing domain) first appeared (with stable ids) in SCOP 1.55, called Protein PI-Scei intein from b.86.1.2: Intein (protein splicing domain)
Protein VMA1-derived endonuclease (VDE) PI-Scei intein from b.86.1.2: Intein (protein splicing domain) appears in SCOPe 2.04
Protein VMA1-derived endonuclease (VDE) PI-Scei intein from b.86.1.2: Intein (protein splicing domain) appears in SCOPe 2.06
Protein VMA1-derived endonuclease (VDE) PI-Scei intein from b.86.1.2: Intein (protein splicing domain) appears in the current release, SCOPe 2.08