SCOPe 2.07: Protein: Urease, beta-subunit

Lineage for Protein: Urease, beta-subunit

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)
Fold b.85: beta-clip [51268] (7 superfamilies)
double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
Superfamily b.85.3: Urease, beta-subunit [51278] (2 families)
Family b.85.3.1: Urease, beta-subunit [51279] (2 proteins)
Protein Urease, beta-subunit [51280] (4 species)

Species:

Bacillus pasteurii [TaxId:1474] [51282] (13 PDB entries)
1. Domain for 1ie7:
  - Domain d1ie7b_: 1ie7 B: [62314]
    Other proteins in same PDB: d1ie7a_, d1ie7c1, d1ie7c2
    complexed with ni, po4
2. Domain for 1s3t:
  - Domain d1s3tb_: 1s3t B: [98461]
    Other proteins in same PDB: d1s3ta_, d1s3tc1, d1s3tc2
    complexed with bo3, ni, so4
3. Domain for 1ubp:
  - Domain d1ubpb_: 1ubp B: [28346]
    Other proteins in same PDB: d1ubpa_, d1ubpc1, d1ubpc2
    complexed with bme, ni
4. Domain for 2ubp:
  - Domain d2ubpb_: 2ubp B: [28347]
    Other proteins in same PDB: d2ubpa_, d2ubpc1, d2ubpc2
    complexed with ni, so4
5. Domain for 3ubp:
  - Domain d3ubpb_: 3ubp B: [28348]
    Other proteins in same PDB: d3ubpa_, d3ubpc1, d3ubpc2
    complexed with 2pa, ni
6. Domain for 4ceu:
  - Domain d4ceub_: 4ceu B: [259180]
    Other proteins in same PDB: d4ceua_, d4ceuc1, d4ceuc2
    automated match to d4ubpb_
    complexed with edo, ni, oh, so4
7. Domain for 4cex:
  - Domain d4cexb_: 4cex B: [259181]
    Other proteins in same PDB: d4cexa_, d4cexc1, d4cexc2
    automated match to d4ubpb_
    complexed with edo, f, ni, so4
8. Domain for 4ubp:
  - Domain d4ubpb_: 4ubp B: [28345]
    Other proteins in same PDB: d4ubpa_, d4ubpc1, d4ubpc2
    complexed with hae, ni
9. Domain for 5fsd:
  - Domain d5fsdb_: 5fsd B: [314489]
    Other proteins in same PDB: d5fsda_
    automated match to d1s3tb_
    complexed with dbx, edo, ni, oh, so4
10. Domain for 5fse:
  - Domain d5fseb_: 5fse B: [314488]
    Other proteins in same PDB: d5fsea_
    automated match to d1s3tb_
    complexed with edo, hqe, ni, oh, so4
11. Domain for 5g4h:
  - Domain d5g4hb_: 5g4h B: [326921]
    Other proteins in same PDB: d5g4ha_
    automated match to d1s3tb_
    complexed with caq, edo, ni, oh, so4
12. Domain for 5ol4:
  - Domain d5ol4b_: 5ol4 B: [347283]
    Other proteins in same PDB: d5ol4a_
    automated match to d2ubpb_
    complexed with 9xn, edo, ni, so4
13. Domain for 6g48:
  - Domain d6g48b_: 6g48 B: [362131]
    Other proteins in same PDB: d6g48a_
    automated match to d2ubpb_
    complexed with ag, edo, ni, oh, so4
Enterobacter aerogenes [TaxId:548] [192455] (4 PDB entries)
1. Domain for 4ep8:
  - Domain d4ep8b_: 4ep8 B: [192397]
    Other proteins in same PDB: d4ep8a_, d4ep8c1, d4ep8c2
    automated match to d1ejxb_
    complexed with ni
2. Domain for 4epb:
  - Domain d4epbb_: 4epb B: [192398]
    Other proteins in same PDB: d4epba_, d4epbc1, d4epbc2
    automated match to d1ejxb_
    complexed with ni
3. Domain for 4epd:
  - Domain d4epdb_: 4epd B: [192399]
    Other proteins in same PDB: d4epda_, d4epdc1, d4epdc2
    automated match to d1ejxb_
    complexed with ni
4. Domain for 4epe:
  - Domain d4epeb_: 4epe B: [192400]
    Other proteins in same PDB: d4epea_, d4epec1, d4epec2
    automated match to d1ejxb_
    complexed with ni
Helicobacter pylori [TaxId:210] [69367] (2 PDB entries)
fused with gamma subunit
1. Domain for 1e9y:
  - Domain d1e9ya1: 1e9y A:106-238 [64846]
    Other proteins in same PDB: d1e9ya2, d1e9yb1, d1e9yb2
    complexed with hae, ni
2. Domain for 1e9z:
  - Domain d1e9za1: 1e9z A:106-238 [64850]
    Other proteins in same PDB: d1e9za2, d1e9zb1, d1e9zb2
    complexed with ni
Klebsiella aerogenes [TaxId:28451] [51281] (28 PDB entries)
1. Domain for 1a5k:
  - Domain d1a5kb_: 1a5k B: [28336]
    Other proteins in same PDB: d1a5ka_, d1a5kc1, d1a5kc2
2. Domain for 1a5l:
  - Domain d1a5lb_: 1a5l B: [28337]
    Other proteins in same PDB: d1a5la_, d1a5lc1, d1a5lc2
3. Domain for 1a5m:
  - Domain d1a5mb_: 1a5m B: [28331]
    Other proteins in same PDB: d1a5ma_, d1a5mc1, d1a5mc2
4. Domain for 1a5n:
  - Domain d1a5nb_: 1a5n B: [28338]
    Other proteins in same PDB: d1a5na_, d1a5nc1, d1a5nc2
    complexed with fmt, ni
5. Domain for 1a5o:
  - Domain d1a5ob_: 1a5o B: [28344]
    Other proteins in same PDB: d1a5oa_, d1a5oc1, d1a5oc2
    complexed with fmt, ni
6. Domain for 1ef2:
  - Domain d1ef2b_: 1ef2 B: [28341]
    Other proteins in same PDB: d1ef2a1, d1ef2a2, d1ef2c_
    complexed with mn
7. Domain for 1ejr:
  - Domain d1ejrb_: 1ejr B: [28320]
    Other proteins in same PDB: d1ejra_, d1ejrc1, d1ejrc2
    complexed with ni
8. Domain for 1ejs:
  - Domain d1ejsb_: 1ejs B: [28332]
    Other proteins in same PDB: d1ejsa_, d1ejsc1, d1ejsc2
    complexed with ni
9. Domain for 1ejt:
  - Domain d1ejtb_: 1ejt B: [28321]
    Other proteins in same PDB: d1ejta_, d1ejtc1, d1ejtc2
    complexed with ni
10. Domain for 1eju:
  - Domain d1ejub_: 1eju B: [28333]
    Other proteins in same PDB: d1ejua_, d1ejuc1, d1ejuc2
    complexed with ni
11. Domain for 1ejv:
  - Domain d1ejvb_: 1ejv B: [28340]
    Other proteins in same PDB: d1ejva_, d1ejvc1, d1ejvc2
    complexed with ni
12. Domain for 1ejw:
  - Domain d1ejwb_: 1ejw B: [90454]
    Other proteins in same PDB: d1ejwa_, d1ejwc1, d1ejwc2
    complexed with ni
13. Domain for 1ejx:
  - Domain d1ejxb_: 1ejx B: [83183]
    Other proteins in same PDB: d1ejxa_, d1ejxc1, d1ejxc2
    complexed with ni
14. Domain for 1fwa:
  - Domain d1fwab_: 1fwa B: [28322]
    Other proteins in same PDB: d1fwaa_, d1fwac1, d1fwac2
    complexed with co3, ni
15. Domain for 1fwb:
  - Domain d1fwbb_: 1fwb B: [28323]
    Other proteins in same PDB: d1fwba_, d1fwbc1, d1fwbc2
    complexed with ni
16. Domain for 1fwc:
  - Domain d1fwcb_: 1fwc B: [28324]
    Other proteins in same PDB: d1fwca_, d1fwcc1, d1fwcc2
    complexed with ni
17. Domain for 1fwd:
  - Domain d1fwdb_: 1fwd B: [28325]
    Other proteins in same PDB: d1fwda_, d1fwdc1, d1fwdc2
    complexed with ni
18. Domain for 1fwe:
  - Domain d1fweb_: 1fwe B: [28334]
    Other proteins in same PDB: d1fwea_, d1fwec1, d1fwec2
    complexed with hae, ni
19. Domain for 1fwf:
  - Domain d1fwfb_: 1fwf B: [28326]
    Other proteins in same PDB: d1fwfa_, d1fwfc1, d1fwfc2
    complexed with ni
20. Domain for 1fwg:
  - Domain d1fwgb_: 1fwg B: [28330]
    Other proteins in same PDB: d1fwga_, d1fwgc1, d1fwgc2
    complexed with ni
21. Domain for 1fwh:
  - Domain d1fwhb_: 1fwh B: [28329]
    Other proteins in same PDB: d1fwha_, d1fwhc1, d1fwhc2
    complexed with ni
22. Domain for 1fwi:
  - Domain d1fwib_: 1fwi B: [28327]
    Other proteins in same PDB: d1fwia_, d1fwic1, d1fwic2
    complexed with ni
23. Domain for 1fwj:
  - Domain d1fwjb_: 1fwj B: [28335]
    Other proteins in same PDB: d1fwja_, d1fwjc1, d1fwjc2
    complexed with ni
24. Domain for 1kau:
  - Domain d1kaub_: 1kau B: [302627]
    Other proteins in same PDB: d1kaua_, d1kauc1, d1kauc2
    automated match to d1fwcb_
    complexed with cbx, ni
25. Domain for 1kra:
  - Domain d1krab_: 1kra B: [28339]
    Other proteins in same PDB: d1kraa_, d1krac1, d1krac2
    mutant
26. Domain for 1krb:
  - Domain d1krbb_: 1krb B: [28342]
    Other proteins in same PDB: d1krba_, d1krbc1, d1krbc2
    complexed with ni; mutant
27. Domain for 1krc:
  - Domain d1krcb_: 1krc B: [28343]
    Other proteins in same PDB: d1krca_, d1krcc1, d1krcc2
    complexed with co2, ni; mutant
28. Domain for 2kau:
  - Domain d2kaub_: 2kau B: [28328]
    Other proteins in same PDB: d2kaua_, d2kauc1, d2kauc2
    CASP1
    complexed with ni

More info for Protein Urease, beta-subunit from b.85.3.1: Urease, beta-subunit

Timeline for Protein Urease, beta-subunit from b.85.3.1: Urease, beta-subunit:

Protein Urease, beta-subunit from b.85.3.1: Urease, beta-subunit first appeared (with stable ids) in SCOP 1.55
Protein Urease, beta-subunit from b.85.3.1: Urease, beta-subunit appears in SCOPe 2.06