SCOPe 2.07: Family b.85.1.1: AFP III-like domain

Lineage for Family b.85.1.1: AFP III-like domain

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.85: beta-clip [51268] (7 superfamilies)
   double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll

4. Superfamily b.85.1: AFP III-like domain [51269] (2 families)
   duplication: consists of two structural repeats related by pseudo dyad

5. Family b.85.1.1: AFP III-like domain [51270] (4 proteins)
   Pfam PF01354

Proteins:

1. Capsule biosynthesis protein SiaC, C-terminal domain [117330] (2 species)

   1. Species Neisseria meningitidis [TaxId:487] [117331] (4 PDB entries)
      Uniprot Q57265

   2. Species Neisseria meningitidis [TaxId:491] [375117] (4 PDB entries)

2. Spore coat polysaccharide biosynthesis protein SpsE, C-terminal domain [110328] (1 species)

   • Species Bacillus subtilis [TaxId:1423] [110329] (1 PDB entry)
     Uniprot P39625

3. Type III antifreeze protein, AFP III [51271] (3 species)

   1. Species Antarctic eel pout (Austrolycichthys brachycephalus) and (Lycodichthys dearborni), RD3 isoform [TaxId:36221] [51273] (4 PDB entries)
      duplication: intramolecular dimer

   2. Species Antarctic eel pout (Lycodichthys dearborni), RD1 isoform [TaxId:8201] [89424] (1 PDB entry)

   3. Species Ocean pout (Macrozoarces americanus), different isoforms [TaxId:8199] [51272] (31 PDB entries)

4. automated matches [191302] (4 species)
   not a true protein

   1. Species Macrozoarces americanus [TaxId:8199] [189997] (1 PDB entry)

   2. Species Zoarces americanus [TaxId:8199] [268414] (1 PDB entry)

   3. Species Zoarces elongatus [TaxId:291231] [255465] (8 PDB entries)

   4. Species Zoarces viviparus [TaxId:48416] [258575] (2 PDB entries)

More info for Family b.85.1.1: AFP III-like domain

Timeline for Family b.85.1.1: AFP III-like domain:

• Family b.85.1.1: AFP III-like domain first appeared (with stable ids) in SCOP 1.55, called Family b.85.1.1: Type III antifreeze protein
  
• Family b.85.1.1: AFP III-like domain appears in SCOPe 2.06
  
• Family b.85.1.1: AFP III-like domain appears in the current release, SCOPe 2.08