SCOPe 2.07: Protein: Catabolite gene activator protein, N-terminal domain

Lineage for Protein: Catabolite gene activator protein, N-terminal domain

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)

Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology

Superfamily b.82.3: cAMP-binding domain-like [51206] (4 families)
Family b.82.3.2: cAMP-binding domain [51210] (13 proteins)
Pfam PF00027
Protein Catabolite gene activator protein, N-terminal domain [51211] (1 species)

Species:

Escherichia coli [TaxId:562] [51212] (31 PDB entries)
1. Domains for 1cgp:
  1. Domain d1cgpa2: 1cgp A:9-137 [28135]
    Other proteins in same PDB: d1cgpa1, d1cgpb1
    protein/DNA complex; complexed with cmp
  2. Domain d1cgpb2: 1cgp B:9-137 [28136]
    Other proteins in same PDB: d1cgpa1, d1cgpb1
    protein/DNA complex; complexed with cmp
2. Domains for 1dbc:
  1. Domain d1dbca3: 1dbc A:9-137 [302318]
    Other proteins in same PDB: d1dbca4, d1dbcb4
    automated match to d1o3ra2
    protein/DNA complex; complexed with cmp
  2. Domain d1dbcb3: 1dbc B:9-137 [302320]
    Other proteins in same PDB: d1dbca4, d1dbcb4
    automated match to d1o3ra2
    protein/DNA complex; complexed with cmp
3. Domains for 1g6n:
  1. Domain d1g6na2: 1g6n A:7-137 [28139]
    Other proteins in same PDB: d1g6na1, d1g6nb1
    complexed with cmp
  2. Domain d1g6nb2: 1g6n B:307-437 [28140]
    Other proteins in same PDB: d1g6na1, d1g6nb1
    complexed with cmp
4. Domains for 1hw5:
  1. Domain d1hw5a2: 1hw5 A:1-137 [28137]
    Other proteins in same PDB: d1hw5a1, d1hw5b1
    complexed with cmp
  2. Domain d1hw5b2: 1hw5 B:1-137 [28138]
    Other proteins in same PDB: d1hw5a1, d1hw5b1
    complexed with cmp
5. Domains for 1i5z:
  1. Domain d1i5za2: 1i5z A:6-137 [83670]
    Other proteins in same PDB: d1i5za1, d1i5zb1
    complexed with cmp, trs
  2. Domain d1i5zb2: 1i5z B:1-137 [83672]
    Other proteins in same PDB: d1i5za1, d1i5zb1
    complexed with cmp, trs
6. Domains for 1i6x:
  1. Domain d1i6xa2: 1i6x A:6-137 [83674]
    Other proteins in same PDB: d1i6xa1, d1i6xb1
    complexed with cmp, trs; mutant
  2. Domain d1i6xb2: 1i6x B:8-137 [83676]
    Other proteins in same PDB: d1i6xa1, d1i6xb1
    complexed with cmp, trs; mutant
7. Domains for 1j59:
  1. Domain d1j59a2: 1j59 A:9-137 [71533]
    Other proteins in same PDB: d1j59a1, d1j59b1
    protein/DNA complex; complexed with cmp
  2. Domain d1j59b2: 1j59 B:9-137 [71535]
    Other proteins in same PDB: d1j59a1, d1j59b1
    protein/DNA complex; complexed with cmp
8. Domain for 1lb2:
  - Domain d1lb2a2: 1lb2 A:9-137 [77870]
    Other proteins in same PDB: d1lb2a1, d1lb2b_, d1lb2e_
    protein/DNA complex; protein/RNA complex; complexed with cmp
9. Domain for 1o3q:
  - Domain d1o3qa2: 1o3q A:8-137 [86606]
    Other proteins in same PDB: d1o3qa1
    protein/DNA complex; complexed with cmp
10. Domain for 1o3r:
  - Domain d1o3ra2: 1o3r A:8-137 [86608]
    Other proteins in same PDB: d1o3ra1
    protein/DNA complex; complexed with cmp
11. Domain for 1o3s:
  - Domain d1o3sa2: 1o3s A:8-137 [86610]
    Other proteins in same PDB: d1o3sa1
    protein/DNA complex; complexed with cmp
12. Domains for 1o3t:
  1. Domain d1o3ta2: 1o3t A:9-137 [86612]
    Other proteins in same PDB: d1o3ta1, d1o3tb1
    protein/DNA complex; complexed with cmp
  2. Domain d1o3tb2: 1o3t B:9-137 [86614]
    Other proteins in same PDB: d1o3ta1, d1o3tb1
    protein/DNA complex; complexed with cmp
13. Domains for 1run:
  1. Domain d1runa2: 1run A:9-137 [28142]
    Other proteins in same PDB: d1runa1, d1runb1
    protein/DNA complex; complexed with cmp
  2. Domain d1runb2: 1run B:9-137 [28143]
    Other proteins in same PDB: d1runa1, d1runb1
    protein/DNA complex; complexed with cmp
14. Domains for 1ruo:
  1. Domain d1ruoa2: 1ruo A:9-137 [28144]
    Other proteins in same PDB: d1ruoa1, d1ruob1
    protein/DNA complex; complexed with cmp; mutant
  2. Domain d1ruob2: 1ruo B:9-137 [28145]
    Other proteins in same PDB: d1ruoa1, d1ruob1
    protein/DNA complex; complexed with cmp; mutant
15. Domains for 1zrc:
  1. Domain d1zrca2: 1zrc A:8-137 [125532]
    Other proteins in same PDB: d1zrca1, d1zrcb1
    automated match to d1i5zb2
    protein/DNA complex; complexed with cmp
  2. Domain d1zrcb2: 1zrc B:8-137 [125534]
    Other proteins in same PDB: d1zrca1, d1zrcb1
    automated match to d1i5zb2
    protein/DNA complex; complexed with cmp
16. Domains for 1zrd:
  1. Domain d1zrda2: 1zrd A:8-137 [125536]
    Other proteins in same PDB: d1zrda1, d1zrdb1
    automated match to d1i5zb2
    protein/DNA complex; complexed with cmp
  2. Domain d1zrdb2: 1zrd B:8-137 [125538]
    Other proteins in same PDB: d1zrda1, d1zrdb1
    automated match to d1i5zb2
    protein/DNA complex; complexed with cmp
17. Domains for 1zre:
  1. Domain d1zrea2: 1zre A:8-137 [125540]
    Other proteins in same PDB: d1zrea1, d1zreb1
    automated match to d1i5zb2
    protein/DNA complex; complexed with cmp
  2. Domain d1zreb2: 1zre B:8-137 [125542]
    Other proteins in same PDB: d1zrea1, d1zreb1
    automated match to d1i5zb2
    protein/DNA complex; complexed with cmp
18. Domains for 1zrf:
  1. Domain d1zrfa2: 1zrf A:7-137 [125544]
    Other proteins in same PDB: d1zrfa1, d1zrfb1
    automated match to d1i5zb2
    protein/DNA complex; complexed with cmp, dio
  2. Domain d1zrfb2: 1zrf B:8-137 [125546]
    Other proteins in same PDB: d1zrfa1, d1zrfb1
    automated match to d1i5zb2
    protein/DNA complex; complexed with cmp, dio
19. Domain for 2cgp:
  - Domain d2cgpa2: 2cgp A:8-137 [28141]
    Other proteins in same PDB: d2cgpa1
    protein/DNA complex; complexed with cmp
20. Domains for 2gzw:
  1. Domain d2gzwa2: 2gzw A:7-137 [135918]
    Other proteins in same PDB: d2gzwa1, d2gzwb1, d2gzwc1, d2gzwd1
    automated match to d1i5za2
    complexed with cmp
  2. Domain d2gzwb2: 2gzw B:7-137 [135920]
    Other proteins in same PDB: d2gzwa1, d2gzwb1, d2gzwc1, d2gzwd1
    automated match to d1i5za2
    complexed with cmp
  3. Domain d2gzwc2: 2gzw C:7-137 [135922]
    Other proteins in same PDB: d2gzwa1, d2gzwb1, d2gzwc1, d2gzwd1
    automated match to d1i5za2
    complexed with cmp
  4. Domain d2gzwd2: 2gzw D:7-137 [135924]
    Other proteins in same PDB: d2gzwa1, d2gzwb1, d2gzwc1, d2gzwd1
    automated match to d1i5zb2
    complexed with cmp
21. Domains for 3fwe:
  1. Domain d3fwea1: 3fwe A:6-137 [210239]
    Other proteins in same PDB: d3fwea2, d3fweb2
    automated match to d1g6na2
    complexed with pro; mutant
  2. Domain d3fweb1: 3fwe B:6-137 [210241]
    Other proteins in same PDB: d3fwea2, d3fweb2
    automated match to d1g6na2
    complexed with pro; mutant
22. Domain for 3n4m:
  - Domain d3n4ma1: 3n4m A:7-137 [199931]
    Other proteins in same PDB: d3n4ma2, d3n4mb_, d3n4mc_
    automated match to d1i5zb2
    protein/DNA complex; protein/RNA complex; complexed with cmp, peg
23. Domains for 3qop:
  1. Domain d3qopa1: 3qop A:8-137 [215332]
    Other proteins in same PDB: d3qopa2, d3qopb2
    automated match to d1g6na2
    complexed with cmp, gol
  2. Domain d3qopb1: 3qop B:8-137 [215334]
    Other proteins in same PDB: d3qopa2, d3qopb2
    automated match to d1g6na2
    complexed with cmp, gol
24. Domains for 3rdi:
  1. Domain d3rdia1: 3rdi A:8-137 [215733]
    Other proteins in same PDB: d3rdia2, d3rdib2
    automated match to d1g6na2
    complexed with cmp
  2. Domain d3rdib1: 3rdi B:8-137 [215735]
    Other proteins in same PDB: d3rdia2, d3rdib2
    automated match to d1g6na2
    complexed with cmp
25. Domains for 3rou:
  1. Domain d3roua1: 3rou A:5-137 [215962]
    Other proteins in same PDB: d3roua2, d3roub2
    automated match to d1g6na2
    complexed with cmp
  2. Domain d3roub1: 3rou B:8-137 [215964]
    Other proteins in same PDB: d3roua2, d3roub2
    automated match to d1g6na2
    complexed with cmp
26. Domains for 3rpq:
  1. Domain d3rpqa1: 3rpq A:7-137 [215977]
    Other proteins in same PDB: d3rpqa2, d3rpqb2
    automated match to d1g6na2
    complexed with cmp, po4
  2. Domain d3rpqb1: 3rpq B:7-137 [215979]
    Other proteins in same PDB: d3rpqa2, d3rpqb2
    automated match to d1g6na2
    complexed with cmp, po4
27. Domains for 3ryp:
  1. Domain d3rypa1: 3ryp A:6-137 [216119]
    Other proteins in same PDB: d3rypa2, d3rypb2
    automated match to d1g6nb2
    complexed with cmp, gol
  2. Domain d3rypb1: 3ryp B:7-137 [216121]
    Other proteins in same PDB: d3rypa2, d3rypb2
    automated match to d1g6nb2
    complexed with cmp, gol
28. Domains for 3ryr:
  1. Domain d3ryra1: 3ryr A:8-137 [216123]
    Other proteins in same PDB: d3ryra2, d3ryrb2
    automated match to d1g6nb2
    complexed with cmp
  2. Domain d3ryrb1: 3ryr B:7-137 [216125]
    Other proteins in same PDB: d3ryra2, d3ryrb2
    automated match to d1g6nb2
    complexed with cmp
29. Domains for 4ft8:
  1. Domain d4ft8a1: 4ft8 A:8-137 [229808]
    Other proteins in same PDB: d4ft8a2, d4ft8b2
    automated match to d1i5zb2
    complexed with cmp, co, so4
  2. Domain d4ft8b1: 4ft8 B:7-137 [229809]
    Other proteins in same PDB: d4ft8a2, d4ft8b2
    automated match to d1i5za2
    complexed with cmp, co, so4
30. Domains for 4n9h:
  1. Domain d4n9ha1: 4n9h A:9-137 [257974]
    Other proteins in same PDB: d4n9ha2, d4n9hb2
    automated match to d1g6nb2
  2. Domain d4n9hb1: 4n9h B:9-137 [257972]
    Other proteins in same PDB: d4n9ha2, d4n9hb2
    automated match to d1g6nb2
31. Domains for 4n9i:
  1. Domain d4n9ia1: 4n9i A:8-137 [257978]
    Other proteins in same PDB: d4n9ia2, d4n9ib2, d4n9ic2, d4n9id2
    automated match to d1g6nb2
    protein/DNA complex; complexed with pcg
  2. Domain d4n9ib1: 4n9i B:8-137 [257976]
    Other proteins in same PDB: d4n9ia2, d4n9ib2, d4n9ic2, d4n9id2
    automated match to d1g6nb2
    protein/DNA complex; complexed with pcg
  3. Domain d4n9ic1: 4n9i C:8-137 [257980]
    Other proteins in same PDB: d4n9ia2, d4n9ib2, d4n9ic2, d4n9id2
    automated match to d1g6nb2
    protein/DNA complex; complexed with pcg
  4. Domain d4n9id1: 4n9i D:8-137 [257982]
    Other proteins in same PDB: d4n9ia2, d4n9ib2, d4n9ic2, d4n9id2
    automated match to d1g6nb2
    protein/DNA complex; complexed with pcg

More info for Protein Catabolite gene activator protein, N-terminal domain from b.82.3.2: cAMP-binding domain

Timeline for Protein Catabolite gene activator protein, N-terminal domain from b.82.3.2: cAMP-binding domain:

Protein Catabolite gene activator protein, N-terminal domain from b.82.3.2: cAMP-binding domain first appeared (with stable ids) in SCOP 1.55
Protein Catabolite gene activator protein, N-terminal domain from b.82.3.2: cAMP-binding domain appears in SCOPe 2.06
Protein Catabolite gene activator protein, N-terminal domain from b.82.3.2: cAMP-binding domain appears in the current release, SCOPe 2.08