Lineage for Protein: Seed storage 7S protein

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2080271Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2080272Superfamily b.82.1: RmlC-like cupins [51182] (25 families) (S)
  5. 2080350Family b.82.1.2: Germin/Seed storage 7S protein [51187] (5 proteins)
  6. 2080374Protein Seed storage 7S protein [51188] (6 species)
    duplication: consists of two germin-like domains spatially arranged as subunits in the RmlC dimer; trimer is similar to the germin hexamer

Species:

  1. 2080375French bean (Phaseolus vulgaris), phaseolin [TaxId:3885] [51189] (2 PDB entries)
    1. Domains for 1phs:
      1. 2080382Domain d1phsa1: 1phs A:11-212 [28088]
        CA-atoms only
      2. 2080383Domain d1phsa2: 1phs A:220-381 [28089]
        CA-atoms only
    2. Domains for 2phl:
      1. 2080376Domain d2phla1: 2phl A:11-210 [28082]
        complexed with nag, po4
      2. 2080377Domain d2phla2: 2phl A:220-381 [28083]
        complexed with nag, po4
      3. 2080378Domain d2phlb1: 2phl B:11-210 [28084]
        complexed with nag, po4
      4. 2080379Domain d2phlb2: 2phl B:220-381 [28085]
        complexed with nag, po4
      5. 2080380Domain d2phlc1: 2phl C:10-210 [28086]
        complexed with nag, po4
      6. 2080381Domain d2phlc2: 2phl C:220-381 [28087]
        complexed with nag, po4
  2. 2080384Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId:3823] [51190] (8 PDB entries)
    1. Domains for 1cau:
      1. 2080397Domain d1caua_: 1cau A: [28102]
      2. 2080398Domain d1caub_: 1cau B: [28103]
    2. Domains for 1cav:
      1. 2080405Domain d1cava_: 1cav A: [28110]
      2. 2080406Domain d1cavb_: 1cav B: [28111]
    3. Domains for 1caw:
      1. 2080407Domain d1cawa_: 1caw A: [28112]
      2. 2080408Domain d1cawb_: 1caw B: [28113]
    4. Domains for 1cax:
      1. 2080399Domain d1caxa_: 1cax A: [28104]
      2. 2080400Domain d1caxb_: 1cax B: [28105]
      3. 2080401Domain d1caxc_: 1cax C: [28106]
      4. 2080402Domain d1caxd_: 1cax D: [28107]
      5. 2080403Domain d1caxe_: 1cax E: [28108]
      6. 2080404Domain d1caxf_: 1cax F: [28109]
    5. Domains for 1dgr:
      1. 2080391Domain d1dgr.1: 1dgr X:,Y: [28097]
        complexed with po4
      2. 2080392Domain d1dgr.2: 1dgr V:,W: [28099]
        complexed with po4
      3. 2080393Domain d1dgr.4: 1dgr N:,M: [144355]
        complexed with po4
      4. 2080394Domain d1dgra_: 1dgr A: [28096]
        complexed with po4
      5. 2080395Domain d1dgrb_: 1dgr B: [28098]
        complexed with po4
      6. 2080396Domain d1dgrc_: 1dgr C: [28100]
        complexed with po4
    6. Domains for 1dgw:
      1. 2080385Domain d1dgw.1: 1dgw X:,Y: [28091]
        complexed with po4
      2. 2080386Domain d1dgwa_: 1dgw A: [28090]
        complexed with po4
    7. Domains for 2cau:
      1. 2080387Domain d2caua1: 2cau A:46-223 [28092]
      2. 2080388Domain d2caua2: 2cau A:246-421 [28093]
    8. Domains for 2cav:
      1. 2080389Domain d2cava1: 2cav A:46-225 [28094]
      2. 2080390Domain d2cava2: 2cav A:246-422 [28095]
  3. 2080409Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId:3847] [110313] (1 PDB entry)
    Uniprot Q7XXT2 204-621
  4. 2080416Soybean (Glycine max), beta-conglycinin beta subunit [TaxId:3847] [109608] (3 PDB entries)
    Uniprot P25974
    1. Domains for 1ipj:
      1. 2080429Domain d1ipja1: 1ipj A:9-176 [71258]
        complexed with nag
      2. 2080430Domain d1ipja2: 1ipj A:183-393 [71259]
        complexed with nag
      3. 2080431Domain d1ipjb1: 1ipj B:9-175 [71260]
        complexed with nag
      4. 2080432Domain d1ipjb2: 1ipj B:186-393 [71261]
        complexed with nag
      5. 2080433Domain d1ipjc1: 1ipj C:9-177 [71262]
        complexed with nag
      6. 2080434Domain d1ipjc2: 1ipj C:181-393 [71263]
        complexed with nag
    2. Domains for 1ipk:
      1. 2080435Domain d1ipka1: 1ipk A:8-174 [71264]
      2. 2080436Domain d1ipka2: 1ipk A:183-392 [71265]
      3. 2080437Domain d1ipkb1: 1ipk B:9-174 [71266]
      4. 2080438Domain d1ipkb2: 1ipk B:183-392 [71267]
      5. 2080439Domain d1ipkc1: 1ipk C:3-180 [71268]
      6. 2080440Domain d1ipkc2: 1ipk C:181-392 [71269]
    3. Domains for 1uij:
      1. 2080417Domain d1uija1: 1uij A:6-175 [107866]
      2. 2080418Domain d1uija2: 1uij A:183-392 [107867]
      3. 2080419Domain d1uijb1: 1uij B:6-175 [107868]
      4. 2080420Domain d1uijb2: 1uij B:183-392 [107869]
      5. 2080421Domain d1uijc1: 1uij C:6-175 [107870]
      6. 2080422Domain d1uijc2: 1uij C:183-392 [107871]
      7. 2080423Domain d1uijd1: 1uij D:6-175 [107872]
      8. 2080424Domain d1uijd2: 1uij D:183-392 [107873]
      9. 2080425Domain d1uije1: 1uij E:6-175 [107874]
      10. 2080426Domain d1uije2: 1uij E:183-392 [107875]
      11. 2080427Domain d1uijf1: 1uij F:6-175 [107876]
      12. 2080428Domain d1uijf2: 1uij F:183-392 [107877]
  5. 2080441Soybean (Glycine max), glycinin A3B4 [TaxId:3847] [89412] (1 PDB entry)
  6. 2080446Soybean (Glycine max), proglycinin [TaxId:3847] [69345] (3 PDB entries)
    1. Domains for 1fxz:
      1. 2080447Domain d1fxza1: 1fxz A:10-248 [65059]
      2. 2080448Domain d1fxza2: 1fxz A:297-470 [65060]
      3. 2080449Domain d1fxzb1: 1fxz B:10-248 [65061]
      4. 2080450Domain d1fxzb2: 1fxz B:297-470 [65062]
      5. 2080451Domain d1fxzc1: 1fxz C:10-248 [65063]
      6. 2080452Domain d1fxzc2: 1fxz C:297-470 [65064]
    2. Domains for 1ucx:
      1. 2080453Domain d1ucxa1: 1ucx A:14-248 [99192]
        mutant
      2. 2080454Domain d1ucxa2: 1ucx A:297-470 [99193]
        mutant
      3. 2080455Domain d1ucxb1: 1ucx B:14-248 [99194]
        mutant
      4. 2080456Domain d1ucxb2: 1ucx B:297-470 [99195]
        mutant
      5. 2080457Domain d1ucxc1: 1ucx C:14-248 [99196]
        mutant
      6. 2080458Domain d1ucxc2: 1ucx C:297-470 [99197]
        mutant
    3. Domains for 1ud1:
      1. 2080459Domain d1ud1a1: 1ud1 A:10-248 [99202]
        mutant
      2. 2080460Domain d1ud1a2: 1ud1 A:297-470 [99203]
        mutant
      3. 2080461Domain d1ud1b1: 1ud1 B:10-248 [99204]
        mutant
      4. 2080462Domain d1ud1b2: 1ud1 B:297-470 [99205]
        mutant
      5. 2080463Domain d1ud1c1: 1ud1 C:10-248 [99206]
        mutant
      6. 2080464Domain d1ud1c2: 1ud1 C:297-470 [99207]
        mutant

More info for Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein

Timeline for Protein Seed storage 7S protein from b.82.1.2: Germin/Seed storage 7S protein: